Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20mulatta_20[refseq_20GCF_5F000772875.2_202015-11-30] 284,728 sequences; 3,236,224,332 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq11 87.8 1e-12 >seq11 Length=133663169 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || ||||| || || ||||| || || || |||| || || || | Sbjct 125063898 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTGGAGCCCAGC 125063839 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | ||| ||||| ||| || ||||| ||||| | || || | Sbjct 125063838 GACACCATTGAGAAT--GTCAAGGCAAAGATCCAGGACAAGGAAGGCATCCCTCCTGACC 125063781 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| |||| || ||||| || ||||| |||| || | ||||| | |||| || |||| Sbjct 125063780 AGCAGAGGTTGATCTTTGCTGGGAAACAGCTGGAAGATGGACGCACCCTGTCTGACTACA 125063721 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| |||||| |||| |||| ||||| |||| ||| | || || Sbjct 125063720 ACATCCAGAAAGAGTCCACTCTGCACTTGGTCCTGCGCTTGAGGGGGGG 125063672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354627513878856