Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20mulatta_20[refseq_20GCF_5F000772875.2_202015-11-30] 284,728 sequences; 3,236,224,332 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq5 86.0 5e-12 seq11 82.4 7e-11 >seq5 Length=190429646 Score = 86.0 bits (94), Expect = 5e-12 Identities = 162/234 (69%), Gaps = 7/234 (3%) Strand=Plus/Minus Query 39061 CCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGT 39120 |||| | ||| ||||||| || || ||| ||||| | || || || || | || Sbjct 87219652 CCTCGCAGGCGCAACACCAGGTGCAGGGTGGACTCTT---GGATGTTGTAGTCTGAGAGA 87219596 Query 39121 G--TTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGC 39177 | | || | || || |||||||||| |||||||| |||||||||||||| |||||| Sbjct 87219595 GAGTGCGGCCATCTTCCAGCTGTTTGCTGGCAAATATCAGACGCTGCTGGTCAGGTGGG- 87219537 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | | ||| ||||| ||||| ||||| || | | || || || | ||| || Sbjct 87219536 ATACCCTCCTTGTCTTGAATTTTGGCTTTGACGTTCTCAATGGTGTCACTGGGCTCGACC 87219477 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTACG 39291 || | ||||| |||| |||| || || || |||||||| ||||| ||| || Sbjct 87219476 TCAAGGGTGATGGTTTTGCCCGGGAGGGTCTTCACAAAGATCTGCATGTTTGCG 87219423 >seq11 Length=133663169 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 39057 GCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGC 39116 ||| |||| | || | ||||| || || ||| |||||| || || || || || | Sbjct 115641801 GCCACCTCACAGGCACAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTCTAGTCTGA 115641860 Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGG 39176 || | || | || || ||||||||||||||||||| |||| ||||||||| | | Sbjct 115641861 GAGACTGCGGCCATCCTCCGGCTGTTTGCCCGCAAATATCAGACACTGCTGGTCAGGCAG 115641920 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCAC 39236 | || || ||||| ||||| ||||| || | || || || | |||||| Sbjct 115641921 GATGCCCTACTTGTCTTGGATTTCGGCTTTGACATTCTCAGTGGTGTCCCTGGGCTCCAC 115641980 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 || | ||||| | || ||| | || || || |||||||| ||||||| Sbjct 115641981 CTCAAGGGTGATGGTCTTGCCCATGAGGGTGTTCACAAAGATCTGCATCT 115642030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428055024148664