Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20mulatta_20[refseq_20GCF_5F000772875.2_202015-11-30] 284,728 sequences; 3,236,224,332 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq18 116 3e-21 >seq18 Length=70235451 Score = 116 bits (128), Expect = 3e-21 Identities = 124/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 || || |||| ||| || |||||||| ||||| || | ||||||||||||||| || || Sbjct 8839046 AGGCCCGTGATGTGCGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGC 8839105 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 || || || |||||||| ||||| |||||||| ||||| || || ||||| | | Sbjct 8839106 ACACCTAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTTCACC 8839165 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAG 27371 || || ||||| || | || ||||| ||||| || ||||| || Sbjct 8839166 ACATAGAACTGGCAGAGAGCATGGCATGGAGGCAGTGCCATCAG 8839209 Score = 109 bits (120), Expect = 4e-19 Identities = 125/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548 ||| || |||| ||||| || ||||||||||| ||||| || || || || |||| ||| Sbjct 8843843 CATATCTCTGTATTCTGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGACCCAAGTC 8843902 Query 27549 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 27608 || ||||| ||| ||| ||| ||||||||||||||| ||| || ||||| || Sbjct 8843903 CCCTTCTTCTCTGGCGGAGAACCCCAGGCTGTCCAAAAAGTCTCGGGATCCATTGGCATC 8843962 Query 27609 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656 |||||| || || ||||| || |||||||| | ||||| || || Sbjct 8843963 CCAGATTTTCACTCCCTTGGAAGACAGCTCTTTAGCATTTGTAGATCC 8844010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 368224964751368