Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20mulatta_20[refseq_20GCF_5F000772875.2_202015-11-30] 284,728 sequences; 3,236,224,332 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq11 114 1e-20 seq5 114 1e-20 seq16 113 4e-20 >seq11 Length=133663169 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || | ||| || ||||| ||| ||| ||||||||||| ||||| || ||||||||| Sbjct 125064137 AGGCGGAGCACGAGGTGCAGGGTGGACTCTTTCTGAATGTTGTAGTCAGACAGGGTGCGC 125064196 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||| || || || || |||| | ||| ||||| | || | || ||| Sbjct 125064197 CCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCC 125064256 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 || ||| ||| ||| ||| | | | |||||||| | ||||||||| | || Sbjct 125064257 TTATCCTGGATCTTTGCCTTGACATTCTCAATGGTGTCGCTGGGCTCCACCTCGAGAGTG 125064316 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || || || ||||| ||||| |||||||| Sbjct 125064317 ATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 125064354 >seq5 Length=190429646 Score = 114 bits (126), Expect = 1e-20 Identities = 166/230 (72%), Gaps = 7/230 (3%) Strand=Plus/Minus Query 41639 CCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGG 41698 || || || || |||||||| ||||| ||| ||| | | ||||| ||||| ||||| Sbjct 87219652 CCTCGCAGGCGCAACACCAGGTGCAGGGTGGACTCTT---GGATGTTGTAGTCTGAGAGA 87219596 Query 41699 G--TGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAA 41756 | |||| | || || ||||| |||| ||| |||||||| ||||| ||||| | || | Sbjct 87219595 GAGTGCGGCCATCTTCCAGCTGTTTGCTGGCAAATATCAGACGCTGCTGGTCAGGTGGGA 87219536 Query 41757 CGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAG-TGTCGCTCGACTCCACC 41815 | ||||||||| ||| |||| |||| ||| || | |||| || | ||| ||| Sbjct 87219535 TACCCTCCTTGTCT-TGAATTTTGGCTTTGACGTTCTCAATGGTGTCACTGGGCTCGACC 87219477 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || | || || ||||| |||| || ||||| || || ||||||||||| Sbjct 87219476 TCAAGGGTGATGGTTTTGCCCGGGAGGGTCTTCACAAAGATCTGCATGTT 87219427 >seq16 Length=77216781 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 || || ||||| || ||| ||||| ||||| ||||| || || ||||| | || || Sbjct 16306431 ACAAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCC 16306490 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||||||||| || || || || | ||| ||||| | ||||| || ||||| ||| | Sbjct 16306491 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTATCCTGG 16306550 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 ||||| ||||| | ||||| || | ||||||||| | || || || || Sbjct 16306551 ATTTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTTG 16306610 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || ||||| ||||| ||||| |||||||| || Sbjct 16306611 CCGGTCAGGGTCTTCACGAAGATCTGCATTTT 16306642 Score = 102 bits (112), Expect = 8e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| ||||| || ||||||||| ||||| ||||| || || ||||| | || || Sbjct 16305975 ACCAGGTGCAGGGTTGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCC 16306034 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||||||||| || || || || | ||| ||||| | ||| | || || || || | Sbjct 16306035 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCTTCTTTATCTTGG 16306094 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || || ||||| | ||||| || | ||||||||||| || || || || Sbjct 16306095 ATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 16306154 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || ||||| || || ||||| |||||||| Sbjct 16306155 CCGGTCAGGGTTTTCACGAAGATCTGCAT 16306183 Score = 102 bits (112), Expect = 8e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| ||||| || ||||||||| ||||| ||||| || || ||||| | || || Sbjct 16306203 ACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCC 16306262 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||||||||| || || || || | ||| ||||| | || | || || || ||| | Sbjct 16306263 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTATCCTGG 16306322 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || || ||||| | ||||| || | |||||| |||| || || || || Sbjct 16306323 ATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTG 16306382 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || ||||| ||||| ||||| |||||||| Sbjct 16306383 CCGGTCAGGGTCTTCACGAAGATCTGCAT 16306411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 460658613833600