Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20nemestrina_20[refseq_20GCF_5F000956065.1_202015-03-19] 9,733 sequences; 2,948,703,511 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq37 215 5e-51 seq237 123 3e-23 seq337 102 8e-17 >seq37 Length=10148950 Score = 215 bits (238), Expect = 5e-51 Identities = 586/886 (66%), Gaps = 27/886 (3%) Strand=Plus/Plus Query 16661 ACAACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCT 16720 || || ||||| || || || || | || | || || || ||||| || || | Sbjct 6163034 ACCACTCCCATCCTCTGATACTCCTTTACTCTCTTCTCAAAGAAGTTCGTCTTTC----- 6163088 Query 16721 AGAGATATATTCTCCATGAAATCAAAAGGATTAG-TAG-CTGAAAATATTTTAGAGTACC 16778 || || ||||||||||| || ||||| || || || ||||||| || | | | Sbjct 6163089 AGTGAAATATTCTCCATAAAGTCAAATGGGTTCTCTACTCTGAAAACCTTGCTAA--AAC 6163146 Query 16779 CCAGTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGT 16838 ||||||| | || ||| || || ||||| || || ||||| ||||| ||| | Sbjct 6163147 CCAGTTCCGGCATG--TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAAT 6163204 Query 16839 TCATTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCG 16898 |||| || || || || || | || || || | ||| || ||||| ||| | Sbjct 6163205 TCATCCCAATGAGCTTCACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAG 6163264 Query 16899 CTTCCTTAATAATACTAGCA---ACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAA 16955 | | | ||||| || | | || ||||| | ||| | ||| || || || | Sbjct 6163265 CAT---TGATAATTCTTTCTCTTATTCTCTCCTCCAATGGTTTGTGTACCAGGTGATTGA 6163321 Query 16956 ACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAA 17015 ||||||| || || ||||| || ||||| ||||| |||| || |||||||| || |||| Sbjct 6163322 ACATCAGGCAAGCAAAATCACAGTGTAAACCCTCATCTCCACTAATAAGTTCATTGGAAA 6163381 Query 17016 ATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAG 17075 | || | || |||||| |||||||||||| | ||| ||||||| || || | |||| Sbjct 6163382 AGGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAG 6163441 Query 17076 AAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTT 17135 ||||| || || || | | ||||| | | | ||||| | || || || ||| Sbjct 6163442 AAAAG---ATGCCTTCCGCTGCAGCAAAGACTACAACACGTTCCCCATAGGTAGCTGCTT 6163498 Query 17136 TGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTA 17195 ||| | |||||| | | |||| || || || | ||| | ||| ||||||||| | Sbjct 6163499 TGTCCCCAATCCAGTGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAA 6163558 Query 17196 TGGCCTTAAA--TAATTTCTCTTTTTCCTGTAGG-TCGATTATATACGTATCGATGAGTA 17252 |||| || || || ||| |||| || | || || |||| || || || || || | Sbjct 6163559 TGGCATTGAAGCGAAATTCCCTTT---CTTTGGGATCTTTTATGTAAGTGTCAATAAGGA 6163615 Query 17253 GGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGG 17312 || |||||| | || |||||||| |||||||| || || || || | || || |||| Sbjct 6163616 AACTATACATTCCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCACAGAAACAGCGGG 6163675 Query 17313 CTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGT 17372 |||| | | |||||||| | |||| ||| | | ||| | || || ||||| | Sbjct 6163676 CTTCTGTCACCTGAACTTCTTGGCTACATCGCTCCACCAAGTTTGCATTTACTATGCCAT 6163735 Query 17373 CGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAA 17432 | || || || || || ||| | ||| || |||||| | || || || | || | Sbjct 6163736 CACTTGC-GCAAAGAAAACCAGAACATGGGATATAAAATATCTCTCCTCGGGCTTCAGGA 6163794 Query 17433 CGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCA 17492 ||||| | | || ||||| ||||| || |||| |||||| || ||| Sbjct 6163795 ATTCCCAGTGCCAAATGTCCTTGGACGGGTCCACCTCCTCGGCGGTCCAGAAGGAAGCTT 6163854 Query 17493 CTGCCTTTTTATACATATTCCAAATATCATTGTATTGTATGGGGAA 17538 | ||||| |||||||| | ||| ||||||| ||| | |||||||| Sbjct 6163855 CCGCCTTCTTATACATCTGCCAGATATCATGGTACTCGATGGGGAA 6163900 >seq237 Length=7777549 Score = 123 bits (136), Expect = 3e-23 Identities = 371/568 (65%), Gaps = 11/568 (2%) Strand=Plus/Plus Query 16959 TCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATG 17018 |||| || || || | || ||||| ||||| || ||||| |||||||| || ||||||| Sbjct 5488335 TCAGGCAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATG 5488394 Query 17019 TCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAA 17078 | | || |||||| |||| ||||||| | ||| |||||| || || || ||||||| Sbjct 5488395 TGAGGCCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAA 5488454 Query 17079 AGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGT 17138 |||| | | || || ||||| || | ||||| | | || ||||||||| Sbjct 5488455 AGAAGGTGCTTTCCACTAGGGCAAAGGCTGCAACACGTTCTCCATGGGTAACGTCTTTGT 5488514 Query 17139 TACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGG 17198 | | |||||| | ||||| | || || | ||| | | | ||| ||| | |||| Sbjct 5488515 TCCCAATCCAACACAAGACCCAAACTGCCTTCTTCTTGACAC-AGGCATTGTTCCAATGG 5488573 Query 17199 CCTT--AAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCT 17256 | || | | || ||| |||| | | | | || || || || || || || || Sbjct 5488574 CATTGAAGAGAAATTCCCTTTCT----TTGTTATCTTTAATGTGTGTCAATAAGGAGACT 5488629 Query 17257 GTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTC 17316 | || || || |||||||| || | || || || || || || ||||| || ||| Sbjct 5488630 ATTTATGTCAGAATGTATGTTTTCTGTAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTC 5488689 Query 17317 CGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCT 17376 | || |||| ||| ||| ||||| | | ||||| | || || || || | Sbjct 5488690 TGTAATCTGAATTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTACTATCCCATCACA 5488749 Query 17377 CGCGGCGAAAAACGCC--AATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACG 17434 || || || || ||| |||||| | | || |||||| |||| || || | || | Sbjct 5488750 TGCTGCAAAGAAAGCCAGAATATAGGAT--ATAAAATATCTTTCCTCAGGCTTCAGGGCT 5488807 Query 17435 CGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACT 17494 ||||| | | || ||||| | | ||| || | || |||| ||| | || || Sbjct 5488808 TCCCAGTGCCAAATGTCCTTGGACAGGTTCACCTCCTGGGCCATCCAGAAAGAAACCTCT 5488867 Query 17495 GCCTTTTTATACATATTCCAAATATCAT 17522 | || |||||| | ||||||||||||| Sbjct 5488868 ACTTTCTTATACGTTTTCCAAATATCAT 5488895 >seq337 Length=12475526 Score = 102 bits (112), Expect = 8e-17 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 |||| ||||||||||||||||| || |||||||| | || |||||| ||||||||||| Sbjct 7490257 CCTCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 7490316 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 | | ||| ||||||| || || || || |||||||| || || || || | ||||| | Sbjct 7490317 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 7490376 Query 17106 C 17106 | Sbjct 7490377 C 7490377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517482634108440