Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20nemestrina_20[refseq_20GCF_5F000956065.1_202015-03-19] 9,733 sequences; 2,948,703,511 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq37 223 4e-53 seq237 134 1e-26 seq9297 107 2e-18 seq337 102 8e-17 >seq37 Length=10148950 Score = 223 bits (246), Expect = 4e-53 Identities = 590/888 (66%), Gaps = 25/888 (3%) Strand=Plus/Plus Query 15902 ACACCCATTCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAA 15961 || ||||| || || || || | || | || || |||||||| || |||| | Sbjct 6163037 ACTCCCATCCTCTGATACTCCTTTACTCTCTTCTCAAAGAAGTTCGTCTTTCAGT----- 6163091 Query 15962 GATATATTTTCCATAAAATCAAAGGGATTAG-TAG-CTGAAAATATCTTAGAGTACCCCA 16019 || ||||| |||||||| ||||| || || || ||||||| ||| | |||| Sbjct 6163092 GAAATATTCTCCATAAAGTCAAATGGGTTCTCTACTCTGAAAAC--CTTGCTAAAACCCA 6163149 Query 16020 GTTCCGTAACTAATCTATCTGCTACAAATTCTATATATTGACACATTA-AGTCGCAATTA 16078 |||||| | ||| ||||| ||||| || || ||||| ||||| ||| |||||| Sbjct 6163150 GTTCCGGCATG--TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGT-GCAATTC 6163206 Query 16079 ATTCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCT 16138 || || || || || || | || | || | |||| ||||||||| ||| || Sbjct 6163207 ATCCCAATGAGCTTCACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCA 6163266 Query 16139 TCTTTAATGATATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATT 16198 | |||| | || | || || | ||| | || ||||| || ||||| Sbjct 6163267 TTGATAATTCTTTCTCTTATTCTCTCCTCCAATGGTTTGTGTACCAGGTGATTGAACATC 6163326 Query 16199 AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTT 16258 || || || || || || |||| || || |||| || |||||||| |||||||| || Sbjct 6163327 AGGCAAGCAAAATCACAGTGTAAACCCTCATCTCCACTAATAAGTTCATTGGAAAAGGTG 6163386 Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAG 16318 | || ||||| |||||||||||| | ||||||||||| ||||| | || |||||| Sbjct 6163387 AGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAG 6163446 Query 16319 AATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTA 16378 || || || | | ||||| | | | |||||| | || ||||| |||| | Sbjct 6163447 ---ATGCCTTCCGCTGCAGCAAAGACTACAACACGTTCCCCATAGGTAGCTGCTTTGTCC 6163503 Query 16379 CGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCC 16438 | |||||| | | |||| || || || | || | |||| ||||||||| ||||| Sbjct 6163504 CCAATCCAGTGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCA 6163563 Query 16439 TTAAA--CAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGT 16496 || || || ||| | |||| | ||| |||| || || ||||| || ||||| | Sbjct 6163564 TTGAAGCGAAATTCCC--TTTCTTTGGGATCTTTTATGTAAGTGTCAATAAGGAAACTAT 6163621 Query 16497 ACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCG 16556 ||||| | || |||||||| || ||||| || || || ||| |||| || || || || | Sbjct 6163622 ACATTCCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTG 6163681 Query 16557 CTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTG 16616 | || ||||| | | |||| ||| ||| ||| |||| || || || ||||||| Sbjct 6163682 TCACCTGAACTTCTTGGCTACATCGCTCCACCAAGTTTGCATTTACTATGCCATCACTTG 6163741 Query 16617 CAGCAA--AAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATG 16674 | |||| ||||| || ||| | | || |||||| | || || | | || | | Sbjct 6163742 C-GCAAAGAAAACCAGAACATGGGAT--ATAAAATATCTCTCCTCGGGCTTCAGGAATTC 6163798 Query 16675 CCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGC 16734 ||| | | || ||||| ||||| || || | ||||| ||| ||| | || Sbjct 6163799 CCAGTGCCAAATGTCCTTGGACGGGTCCACCTCCTCGGCGGTCCAGAAGGAAGCTTCCGC 6163858 Query 16735 CTTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAATACGAC 16782 ||| |||||||| | ||| ||||||| ||| | ||||| || | ||| Sbjct 6163859 CTTCTTATACATCTGCCAGATATCATGGTACTCGATGGGGAAGATGAC 6163906 >seq237 Length=7777549 Score = 134 bits (148), Expect = 1e-26 Identities = 378/571 (66%), Gaps = 12/571 (2%) Strand=Plus/Plus Query 16195 CATT-AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAA 16253 |||| || || || |||| || |||| || || || ||||| |||||||| ||||||| Sbjct 5488332 CATTCAGGCAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAA 5488391 Query 16254 AAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCG 16313 | || | || ||||| |||| ||||||| | |||||||||| ||||| || || | Sbjct 5488392 ATGTGAGGCCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAG 5488451 Query 16314 AAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTT 16373 ||||||| | | || || ||||| || | ||||| | | ||| | |||| Sbjct 5488452 AAAAGAAGGTGCTTTCCACTAGGGCAAAGGCTGCAACACGTTCTCCATGGGTAACGTCTT 5488511 Query 16374 TATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTA 16433 | || | |||||| | ||||| | || || | || | ||| | || ||| | | Sbjct 5488512 TGTTCCCAATCCAACACAAGACCCAAACTGCCTTCTTCTTGACACAGGC-ATTGTTCCAA 5488570 Query 16434 TGGCCTTAAACA--ATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAA 16491 |||| || || | | ||| |||| | || |||| | || | || ||||| || | Sbjct 5488571 TGGCATTGAAGAGAAATTCCCTTTCTT-TGT-TATCTTTAATGT--GTGTCAATAAGGAG 5488626 Query 16492 ACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGC 16551 ||| | || || || |||||||| ||| | || || || || ||||||||||| | Sbjct 5488627 ACTATTTATGTCAGAATGTATGTTTTCTGTAGCAATTTGGAAGCCATAGAAGCAGAAGGT 5488686 Query 16552 CTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTC 16611 || | || || | ||| |||| ||||| ||| ||| |||| || || || || Sbjct 5488687 TTCTGTAATCTGAATTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTACTATCCCATC 5488746 Query 16612 ACTTGCAGCAAAAAACGCC--AATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGA 16669 || ||| ||||| || ||| ||||| | | || |||||| |||| |||| | || Sbjct 5488747 ACATGCTGCAAAGAAAGCCAGAATATAGGAT--ATAAAATATCTTTCCTCAGGCTTCAGG 5488804 Query 16670 ATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCC 16729 | ||| | | || ||||| | | ||| || | | | |||| || | || Sbjct 5488805 GCTTCCCAGTGCCAAATGTCCTTGGACAGGTTCACCTCCTGGGCCATCCAGAAAGAAACC 5488864 Query 16730 ACTGCCTTTTTATACATTTTCCAAATATCAT 16760 || | || |||||| ||||||||||||||| Sbjct 5488865 TCTACTTTCTTATACGTTTTCCAAATATCAT 5488895 >seq9297 Length=17183 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 16224 CTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCT 16283 |||| ||||||||||| ||||| ||||||||||| | |||||||| |||| |||| Sbjct 1699 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCT 1640 Query 16284 TTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAG 16343 ||| ||||||||| |||||||| || || || ||||| || || || |||| ||||| | Sbjct 1639 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 1580 Query 16344 CGATTAATCGTTCC 16357 | | | || |||| Sbjct 1579 CCACCACTCTTTCC 1566 >seq337 Length=12475526 Score = 102 bits (112), Expect = 8e-17 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 || ||||||||||||||||| |||||||| || | || ||||| |||||||||||| Sbjct 7490259 TCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 7490318 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGC 16344 | ||||||||||| ||||| || || |||||||| || || || || | ||||| || Sbjct 7490319 AGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGC 7490377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511352180045560