Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20nemestrina_20[refseq_20GCF_5F000956065.1_202015-03-19] 9,733 sequences; 2,948,703,511 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq37 307 1e-78 seq237 210 3e-49 seq9297 116 4e-21 seq3224 114 2e-20 seq337 104 3e-17 seq9224 100 3e-16 seq1336 95.1 1e-14 seq170 87.8 2e-12 >seq37 Length=10148950 Score = 307 bits (340), Expect = 1e-78 Identities = 635/938 (68%), Gaps = 25/938 (3%) Strand=Plus/Plus Query 23788 TTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTT 23844 |||| |||||| |||| || | |||| ||| ||| | || |||| |||||||| Sbjct 6162987 TTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGATTCGACACCACTCCCATCC 6163046 Query 23845 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTT 23904 | || || || || | || || || || || || || | | ||| ||||| | Sbjct 6163047 TCTGATACTCCTTTACTCTCTTCTCAAAGAAGTTCGTCTTTC-----AGTGAAATATTCT 6163101 Query 23905 CCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATTCAGAAATCA 23964 |||| || || |||| || || | | | | |||| |||| ||| | || Sbjct 6163102 CCATAAAGTCAAATGGGTTCTCTACTCTGAAAACCTTGCTAAAACCCAGTTCCGGCATG- 6163160 Query 23965 ATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTT 24024 ||| ||||| |||||||| || ||| ||||| | |||||||| || || || | Sbjct 6163161 -TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCT 6163219 Query 24025 TAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAG 24084 | || || | ||| |||| || ||||| ||||| || || || | | || | Sbjct 6163220 TCACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCATTGATAATTCTTT 6163279 Query 24085 ATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAAT 24144 ||||| | | || || ||| | | | || || ||||||| || || |||| Sbjct 6163280 CTCTTATTCTCTCCTCCAATGGTTTGTGTACCAGGTGATTGAACATCAGGCAAGCAAAAT 6163339 Query 24145 CGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTA 24204 | ||||||| |||||| |||| |||||| | ||| |||||||| ||||| || ||||| | Sbjct 6163340 CACAGTGTAAACCCTCATCTCCACTAATAAGTTCATTGGAAAAGGTGAGGCCAGGCATCA 6163399 Query 24205 GGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTA 24264 | || || || || ||||| ||||| || ||||| | |||||||||| | ||||| Sbjct 6163400 GTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAGA---TGCCTTCCG 6163456 Query 24265 CTGCCGCAAAGGCAATAAGTCTTTCTCCATA---ACCGGCGCTGTCATGTATCCACTTTT 24321 |||| |||||| | | || | ||| ||||| | | || |||| ||||| | Sbjct 6163457 CTGCAGCAAAGACTACAACACGTTCCCCATAGGTAGCTGCTTTGTCCCCAATCCAGTGCA 6163516 Query 24322 GAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGt 24381 |||||||| |||||||| || ||||||||||| || || || ||||| ||| || | | Sbjct 6163517 AGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGCGAAATT 6163576 Query 24382 ttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAA 24441 |||| || |||||| | || || ||||| | | |||||||||| | ||||| | Sbjct 6163577 CCCTTTCTTTGGGATCTTTTATGTAAGTGTCAATAAGGAAACTATACATTCCAGAATGTA 6163636 Query 24442 TGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTA 24501 ||||||| ||||| ||||| || || ||||||| | || || || | ||| |||||| Sbjct 6163637 TGTTTTCCATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCACCTGAACTTCTT 6163696 Query 24502 TACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCA 24561 | | |||| || | || ||| |||| ||||| || ||||| || ||||| || ||| Sbjct 6163697 GGCTACATCGCTCCACCAAGTTTGCATTTACTATGCCATCACTTGC-GCAAAGAAAACCA 6163755 Query 24562 ATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTG----ATA 24617 ||||| |||||||||| | || || || | || ||||| || || || Sbjct 6163756 GAACATGGGATATAAAATATCTCTCCTCGGGCTTCAG-GAATTCC---CAGTGCCAAATG 6163811 Query 24618 TCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATA 24677 || || || ||||| || || | ||||| || || || || ||||| |||||||| Sbjct 6163812 TCCTTGGACGGGTCCACCTCCTCGGCGGTCCAGAAGGAAGCTTCCGCCTTCTTATACATC 6163871 Query 24678 TTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 24715 | |||||| ||||| || | || || || || ||||| Sbjct 6163872 TGCCAGATATCATGGTACTCGATGGGGAAGATGACAAA 6163909 >seq237 Length=7777549 Score = 210 bits (232), Expect = 3e-49 Identities = 380/550 (69%), Gaps = 8/550 (1%) Strand=Plus/Plus Query 24147 CAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGG 24206 ||||||| |||||| || || ||||| | ||| |||||||| ||||| || ||||| || Sbjct 5488352 CAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGT 5488411 Query 24207 CCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACT 24266 || | || || ||||| ||||| ||||| || ||||||||||| | | ||| ||| Sbjct 5488412 CCTTGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGAAGGTGCTTTCCACT 5488471 Query 24267 GCCGCAAAGGCAATAAGTCTTTCTCCAT---AACCGGCGCTGTCATGTATCC-ACTTTTG 24322 |||||||| || | |||||||| | || | ||| |||| || | Sbjct 5488472 AGGGCAAAGGCTGCAACACGTTCTCCATGGGTAACGTCTTTGTTCCCAATCCAACACAAG 5488531 Query 24323 AGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtt 24382 | ||||| | |||||||| || |||| ||||||||| | || ||||| |||||| | | Sbjct 5488532 A-CCCAAACTGCCTTCTTCTTGACAC-AGGCATTGTTCCAATGGCATTGAAGAGAAATTC 5488589 Query 24383 tttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAAT 24442 |||| || |||||||| || ||| ||||| | ||||||| || || ||||| || Sbjct 5488590 CCTTTCTTTGTTATCTTTA--ATGTGTGTCAATAAGGAGACTATTTATGTCAGAATGTAT 5488647 Query 24443 GTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTAT 24502 |||||| | || ||||| || || ||||| || | || |||||||| | |||| Sbjct 5488648 GTTTTCTGTAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCTGTAATCTGAATTTCTTG 5488707 Query 24503 ACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAA 24562 | |||| |||| | || ||||||| ||||| || |||| |||||||| || |||| Sbjct 5488708 AACAAATTGTTCCACCAAGTTTTCATCTACTATCCCATCACATGCTGCAAAGAAAGCCAG 5488767 Query 24563 TACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTT 24622 | || |||||||||| |||| || || | || | ||| | || || || Sbjct 5488768 AATATAGGATATAAAATATCTTTCCTCAGGCTTCAGGGCTTCCCAGTGCCAAATGTCCTT 5488827 Query 24623 AGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCA 24682 || | | ||| || | | |||| || || ||||| | || |||||| | ||||| Sbjct 5488828 GGACAGGTTCACCTCCTGGGCCATCCAGAAAGAAACCTCTACTTTCTTATACGTTTTCCA 5488887 Query 24683 GATGTCATGA 24692 || |||||| Sbjct 5488888 AATATCATGA 5488897 >seq9297 Length=17183 Score = 116 bits (128), Expect = 4e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 24159 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 24218 || ||||| || || | ||| |||||||| |||||||| ||||| || || | ||| || Sbjct 1697 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCTTT 1638 Query 24219 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCA 24278 ||||| ||||| | ||||| ||||| || ||||||||||||||||| || |||||||| Sbjct 1637 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 1578 Query 24279 ATAAGTCTTTCTCC 24292 | | |||||| || Sbjct 1577 ACCACTCTTTCCCC 1564 >seq3224 Length=21299586 Score = 114 bits (126), Expect = 2e-20 Identities = 128/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934 |||| ||||| || |||||||| || |||||| ||| | || || || || ||||||| Sbjct 2303265 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATAT 2303324 Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994 ||| |||||| |||||||| ||||| || || || || || ||||| || | | || | Sbjct 2303325 TCAAAGATTGGCTTTGATCAATGAAAGCACCTCTCTCAGCTGCCATCTTGAGAACGGTTT 2303384 Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 53045 | || | |||||||| | ||||||||||| | |||| | || || |||| Sbjct 2303385 TCTGAGAGATTTCCCACACAGTTTTATAAAGTTGCTTCAGGTCATCAGGAA 2303435 Score = 107 bits (118), Expect = 2e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209 || ||||||||||| ||||| ||||| ||||| || || || ||||| || ||||| | Sbjct 2306112 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATG 2306171 Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 53269 ||||||||||| |||| || |||||||| || || || ||||| || || | | |||| Sbjct 2306172 GACTCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAA 2306231 Query 53270 CTATTTCTAAGACCGTA 53286 || ||||| | ||| || Sbjct 2306232 CTGTTTCTTATACCATA 2306248 Score = 105 bits (116), Expect = 8e-18 Identities = 102/131 (78%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 54029 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT 54088 ||||||||||| |||||||| |||||||||||||| | || |||||||||| | || Sbjct 2317668 ACTCGTTTCATGAAGAGATCCGGAATCCAAAGAGCAAAGAAAAGATCTCTGGCACGCTGC 2317727 Query 54089 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 54148 ||||| |||||||| ||||| || | ||| ||||| | | || || ||||||| || Sbjct 2317728 TCCTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCAAGGC 2317787 Query 54149 TCCAAGTATAT 54159 |||| ||| || Sbjct 2317788 TCCAGGTAAAT 2317798 Score = 87.8 bits (96), Expect = 2e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 |||| || | ||| |||||||||||||||| || || || || || || || || || | Sbjct 2338130 CACTGAACACTTTCTTTGTTTCTTTGTGTAAGTTAGAGACAGCAATCCTGGCTGCCAGGA 2338189 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 | ||||| || || || | ||||| | || || ||| |||| || | || ||| || | Sbjct 2338190 TAGCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAAAGTATCTA 2338249 Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933 ||| || || || || ||| | || | |||||||| || ||||| Sbjct 2338250 GTTCCACTGTGGTGACCCCACTGTACAAGCCTTGGATTACTTTCAT 2338295 >seq337 Length=12475526 Score = 104 bits (114), Expect = 3e-17 Identities = 95/120 (79%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 24395 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 24454 |||||| | || || ||||| | ||||||||||||||| ||||| |||||||| ||||| Sbjct 7492360 ATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGC 7492419 Query 24455 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTC 24514 ||||| || || |||||||| | || || |||||||| |||||| | |||||| || Sbjct 7492420 AATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 7492479 >seq9224 Length=17174830 Score = 100 bits (110), Expect = 3e-16 Identities = 152/216 (70%), Gaps = 3/216 (1%) Strand=Plus/Plus Query 21922 ATCTAGAGATTGTACTTCTTTCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGC 21981 ||| | || ||| ||||||| | |||||||||| | || |||| | || || || || Sbjct 3229329 ATCCAAAGCTTGAACTTCTTCTATTTCTGGATAAAAAATCCGTTCGCAAATGAGTTGTGC 3229388 Query 21982 TATTCTATCCCCCGTATTTACATTAAATGTATATTTTCCATTATTAATAAGAATGACTCC 22041 |||| ||| ||| | || || | ||| | | ||| ||| ||||| || | || || Sbjct 3229389 AATTCGATCACCCTTTTTGACTTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACC 3229448 Query 22042 TATATTTCCCCTATAATCTTCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAG 22098 | |||||| ||||||||||| | ||| ||||| |||||| |||||| | |||| Sbjct 3229449 AACATTTCCTCTATAATCTTCATTTATGACACCAGCTCCTACATCAATAAAGTGTTTTGC 3229508 Query 22099 GGACAGACCAGACCTAGGAGCTATTCTACCATAGCA 22134 | || || |||| ||||||| ||| ||||| || Sbjct 3229509 AGCCAAGCCTGACCGTGGAGCTACTCTTCCATAACA 3229544 >seq1336 Length=15368434 Score = 95.1 bits (104), Expect = 1e-14 Identities = 177/255 (69%), Gaps = 9/255 (4%) Strand=Plus/Plus Query 21883 TCCGGTTGATCCAAACCCT--TGATCTCCTCTATCTGTACTATCTAGAGATTGTACTTCT 21940 ||| || || ||||| ||| ||| | ||| | ||| ||| | || ||| |||||| Sbjct 3172634 TCCAGTAGAACCAAAACCTCCTGAACCCCTTTTGGTGTC--ATCCAAAGCTTGAACTTCT 3172691 Query 21941 TTCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCCCCCGTATTT 22000 | | ||||||||| | || |||| | | || ||||| || |||| ||| | ||||| Sbjct 3172692 TCTATTTCTGGATAGAACATCCGTTCACAAATGAGCTGTGCAATTCGATCACGT-TATTT 3172750 Query 22001 -ACATTAAATGTATATTTTCCATTATTAATAAGAATGACTCCTATATTTCCCCTATAATC 22059 || | ||| | | ||| ||| ||||| | | || || |||||||| |||||||| Sbjct 3172751 GACTTCAAACTTTTCTTTGCCAAAATTAAAGACTACAACACCAATATTTCCTCTATAATC 3172810 Query 22060 TTCGTCTATTACACCGCCTCCTATAT---CAATGCCTTTTAGGGACAGACCAGACCTAGG 22116 ||| ||| | ||||| |||||| || ||| | |||| | || ||||||| || Sbjct 3172811 TTCATCTGTGACACCAGCTCCTACATCTACAACGTGTTTTGCAGCCAAGCCAGACCGTGG 3172870 Query 22117 AGCTATTCTACCATA 22131 ||||| ||| ||||| Sbjct 3172871 AGCTACTCTTCCATA 3172885 >seq170 Length=10713981 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/209 (70%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 21883 TCCGGTTGATCCAAACCCT--TGATCTCCTCTATCTGTACTATCTAGAGATTGTACTTCT 21940 ||| || || ||||| ||| ||| | ||| | ||| ||| | || ||| |||||| Sbjct 2521879 TCCAGTGGAACCAAAACCTCCTGAACCCCTTTCCGTGTC--ATCCAAAGCTTGAACTTCT 2521822 Query 21941 TTCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCCCCCGTATTT 22000 | | |||||||||| | || |||| | || ||||| || |||| ||| | | | || Sbjct 2521821 TCTATTTCTGGATAAAAAATCCGTTCGCAAATGAGCTGTGCAATTCGATCACACTTTTTG 2521762 Query 22001 ACATTAAATGTATATTTTCCATTATTAATAAGAATGACTCCTATATTTCCCCTATAATCT 22060 || | ||| | | ||| ||| |||| || | | || | |||||| ||||||||| Sbjct 2521761 ACTTCAAACTTTTCTTTGCCAAAGTTAAACAGTACACCACCAACATTTCCTCTATAATCT 2521702 Query 22061 TCGTCTATTACACCGCCTCCTATATCAAT 22089 || ||||| ||||| |||||| |||||| Sbjct 2521701 TCATCTATGACACCAGCTCCTACATCAAT 2521673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593649366345840