Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20nemestrina_20[refseq_20GCF_5F000956065.1_202015-03-19] 9,733 sequences; 2,948,703,511 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq7779 208 9e-49 seq225 174 2e-38 seq59 156 5e-33 >seq7779 Length=26856881 Score = 208 bits (230), Expect = 9e-49 Identities = 601/916 (66%), Gaps = 23/916 (3%) Strand=Plus/Plus Query 9459 AGCTCAGGTGGTACCCGCCCTGTATCTGCTTGTGTTTCTCTTTGGGTTGTTGGGCAATAT 9518 ||| ||| | || ||| | |||||| || ||||| | | || | |||||||| | Sbjct 16645373 AGCCCAGTTCGTGCCCCCGCTGTATTCCCTGGTGTTCATGGTGGGCCTCTTGGGCAACGT 16645432 Query 9519 CTTAGTGGTGATTATTGTCATAAGATACATGAAGATCAAAAACCTCACTAACATGTTACT 9578 | |||||||| || |||||| ||||| || | || || | || ||||| | || Sbjct 16645433 GGTGGTGGTGATGATCCTCATAAAATACAGGAGGCTCCGAATTATGACCAACATCTACCT 16645492 Query 9579 GTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACTTTGCCATTTTGGATGCACTA 9638 | | ||| |||| || || ||| |||| || || || || | || || ||||| ||||| Sbjct 16645493 GCTCAACCTGGCCATTTCGGACCTGCTCTTCCTCTTCACCCTTCCGTTCTGGATCCACTA 16645552 Query 9639 TATT--GGAATGTATCATGATTGGACTTTTGGTATTTCCCTGTGTAAACTGCTCAGGGGT 9696 | | ||| ||| | | || ||| | || | ||||||| | ||| ||| Sbjct 16645553 TGTCAGGGAGCGTAAC----TGGGTCTTCAGCCATGGCA-TGTGTAAGGTCCTCTCGGGG 16645607 Query 9697 GTGTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTAACAGTAGACAGG 9756 | | | ||| |||||||| || |||||| ||| ||||| || || | |||||| Sbjct 16645608 TTTTATCACACAGGCTTGTACAGCGAGATCTTTTTCATAATCCTCCTGACGATTGACAGG 16645667 Query 9757 TATCTAGCTGTTGTCTATGCTGTAACTGC--TTTGAGGTTTAGAACAGTAACCTGTGGCA 9814 || || || ||||| ||||||| ||| || ||| || || || || | ||| Sbjct 16645668 TACCTGGCCATTGTCCATGCTGTGTTTGCCCTTCGAGCC--AGGACTGTCACTTTTGGTG 16645725 Query 9815 TAGTTACCTGTGTATGTACCTGGTTTCTGGCAGGGTTGTTGTCCCTCCCTGAATTTTTCT 9874 | | || | | |||||| ||||||| | | | || ||||||||| | | Sbjct 16645726 TCATCACTAGCATCGTCACCTGGGGCCTGGCAGTGCTAGCAGCTCTTCCTGAATTTATTT 16645785 Query 9875 TTCATGGACACCAAGATGACAATGGTAGGGT-TCAGTGTGATCCTTACTACCCAGAGATG 9933 | |||| |||| | | || | || || | || |||||| || Sbjct 16645786 TCTATGGGACTGAAGA-GTTGTTTCCAGAGACTCTTTGCAGTGCTATTTACCCACAGGAT 16645844 Query 9934 TCTACAAATGTTTGGAGGCGCGCCCACGTTGCAAAGGTGATTATGTTAAGTCTCATTTTG 9993 | | || ||||||| |||| | | ||| || || ||||| | | Sbjct 16645845 ACAGTATATAGCTGGAGGCATTTCCACACTCTGAGAATGACCATCTTGTGTCTCGCTCTC 16645904 Query 9994 CCTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCAGAAGACTGTTGAGGCGCCCC 10053 ||||||||| ||||||| |||||||| | ||| |||| || ||| ||||| ||||| Sbjct 16645905 CCTCTGCTCGTTATGGCCATCTGCTACACAGGAATCATCAAAACGCTGCTGAGGTGCCCC 16645964 Query 10054 AGCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGGCCTATTTTGTT 10113 || || || ||||||||||||||| ||||||| ||||||||||||| | | ||| || Sbjct 16645965 AGTAAAAAAAAGTACAAGGCCATCCGGCTCATTTTTGTCATCATGGCTGTGTTTTTCATT 16646024 Query 10114 TTTTGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCACGCAACCCTTCTTA-- 10171 || |||||||||||||| | | | |||| | ||||||| | ||| || ||||| Sbjct 16646025 TTCTGGACACCCTACAATGTGGCTATCCTTATCTCTACCTAT----CAATCCGTCTTATT 16646080 Query 10172 ---ACCTGCAGTGTGCATTGAGCAGTAACTTGGACATGGCTCTGCTGATAACAAAAACAG 10228 || || | |||| | ||||| | ||||| || ||||| || | Sbjct 16646081 TGGACTTG-ATTGTGAACGGAGCAAGCATCTGGACCTGTTCGTGCTGGCGACGGAGGTGA 16646139 Query 10229 TAGCCTACACACACTGTTGCATCAACCCAGTGATCTACGCGTTCGTGGGGGAGAAGTTTA 10288 | |||||| | ||||| ||| | ||||||||||||||||| || || || |||| ||| Sbjct 16646140 TCGCCTACTCCCACTGCTGCGTGAACCCAGTGATCTACGCCTTTGTTGGAGAGAGGTTCC 16646199 Query 10289 GAAGACACCTGTACCACTTCTTCCACACCTACGTGGCCATCTACCTCTGCAAGTACATCC 10348 | | ||||| |||||||||||||| ||||| ||| |||| |||| ||||||| Sbjct 16646200 GGAAGTACCTGCGCCACTTCTTCCACAGGCACGTGCTCATGCACCTGGGCAAATACATCC 16646259 Query 10349 CCTTCCTGTCTGGTGA 10364 | ||||| || |||| Sbjct 16646260 CATTCCTTCCTAGTGA 16646275 Score = 208 bits (230), Expect = 9e-49 Identities = 601/916 (66%), Gaps = 23/916 (3%) Strand=Plus/Plus Query 176345 AGCTCAGGTGGTACCCGCCCTGTATCTGCTTGTGTTTCTCTTTGGGTTGTTGGGCAATAT 176404 ||| ||| | || ||| | |||||| || ||||| | | || | |||||||| | Sbjct 16645373 AGCCCAGTTCGTGCCCCCGCTGTATTCCCTGGTGTTCATGGTGGGCCTCTTGGGCAACGT 16645432 Query 176405 CTTAGTGGTGATTATTGTCATAAGATACATGAAGATCAAAAACCTCACTAACATGTTACT 176464 | |||||||| || |||||| ||||| || | || || | || ||||| | || Sbjct 16645433 GGTGGTGGTGATGATCCTCATAAAATACAGGAGGCTCCGAATTATGACCAACATCTACCT 16645492 Query 176465 GTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACTTTGCCATTTTGGATGCACTA 176524 | | ||| |||| || || ||| |||| || || || || | || || ||||| ||||| Sbjct 16645493 GCTCAACCTGGCCATTTCGGACCTGCTCTTCCTCTTCACCCTTCCGTTCTGGATCCACTA 16645552 Query 176525 TATT--GGAATGTATCATGATTGGACTTTTGGTATTTCCCTGTGTAAACTGCTCAGGGGT 176582 | | ||| ||| | | || ||| | || | ||||||| | ||| ||| Sbjct 16645553 TGTCAGGGAGCGTAAC----TGGGTCTTCAGCCATGGCA-TGTGTAAGGTCCTCTCGGGG 16645607 Query 176583 GTGTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTAACAGTAGACAGG 176642 | | | ||| |||||||| || |||||| ||| ||||| || || | |||||| Sbjct 16645608 TTTTATCACACAGGCTTGTACAGCGAGATCTTTTTCATAATCCTCCTGACGATTGACAGG 16645667 Query 176643 TATCTAGCTGTTGTCTATGCTGTAACTGC--TTTGAGGTTTAGAACAGTAACCTGTGGCA 176700 || || || ||||| ||||||| ||| || ||| || || || || | ||| Sbjct 16645668 TACCTGGCCATTGTCCATGCTGTGTTTGCCCTTCGAGCC--AGGACTGTCACTTTTGGTG 16645725 Query 176701 TAGTTACCTGTGTATGTACCTGGTTTCTGGCAGGGTTGTTGTCCCTCCCTGAATTTTTCT 176760 | | || | | |||||| ||||||| | | | || ||||||||| | | Sbjct 16645726 TCATCACTAGCATCGTCACCTGGGGCCTGGCAGTGCTAGCAGCTCTTCCTGAATTTATTT 16645785 Query 176761 TTCATGGACACCAAGATGACAATGGTAGGGT-TCAGTGTGATCCTTACTACCCAGAGATG 176819 | |||| |||| | | || | || || | || |||||| || Sbjct 16645786 TCTATGGGACTGAAGA-GTTGTTTCCAGAGACTCTTTGCAGTGCTATTTACCCACAGGAT 16645844 Query 176820 TCTACAAATGTTTGGAGGCGCGCCCACGTTGCAAAGGTGATTATGTTAAGTCTCATTTTG 176879 | | || ||||||| |||| | | ||| || || ||||| | | Sbjct 16645845 ACAGTATATAGCTGGAGGCATTTCCACACTCTGAGAATGACCATCTTGTGTCTCGCTCTC 16645904 Query 176880 CCTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCAGAAGACTGTTGAGGCGCCCC 176939 ||||||||| ||||||| |||||||| | ||| |||| || ||| ||||| ||||| Sbjct 16645905 CCTCTGCTCGTTATGGCCATCTGCTACACAGGAATCATCAAAACGCTGCTGAGGTGCCCC 16645964 Query 176940 AGCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGGCCTATTTTGTT 176999 || || || ||||||||||||||| ||||||| ||||||||||||| | | ||| || Sbjct 16645965 AGTAAAAAAAAGTACAAGGCCATCCGGCTCATTTTTGTCATCATGGCTGTGTTTTTCATT 16646024 Query 177000 TTTTGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCACGCAACCCTTCTTA-- 177057 || |||||||||||||| | | | |||| | ||||||| | ||| || ||||| Sbjct 16646025 TTCTGGACACCCTACAATGTGGCTATCCTTATCTCTACCTAT----CAATCCGTCTTATT 16646080 Query 177058 ---ACCTGCAGTGTGCATTGAGCAGTAACTTGGACATGGCTCTGCTGATAACAAAAACAG 177114 || || | |||| | ||||| | ||||| || ||||| || | Sbjct 16646081 TGGACTTG-ATTGTGAACGGAGCAAGCATCTGGACCTGTTCGTGCTGGCGACGGAGGTGA 16646139 Query 177115 TAGCCTACACACACTGTTGCATCAACCCAGTGATCTACGCGTTCGTGGGGGAGAAGTTTA 177174 | |||||| | ||||| ||| | ||||||||||||||||| || || || |||| ||| Sbjct 16646140 TCGCCTACTCCCACTGCTGCGTGAACCCAGTGATCTACGCCTTTGTTGGAGAGAGGTTCC 16646199 Query 177175 GAAGACACCTGTACCACTTCTTCCACACCTACGTGGCCATCTACCTCTGCAAGTACATCC 177234 | | ||||| |||||||||||||| ||||| ||| |||| |||| ||||||| Sbjct 16646200 GGAAGTACCTGCGCCACTTCTTCCACAGGCACGTGCTCATGCACCTGGGCAAATACATCC 16646259 Query 177235 CCTTCCTGTCTGGTGA 177250 | ||||| || |||| Sbjct 16646260 CATTCCTTCCTAGTGA 16646275 Score = 96.9 bits (106), Expect = 4e-15 Identities = 173/251 (69%), Gaps = 5/251 (2%) Strand=Plus/Minus Query 176429 ATACATGAAGATCAAAAACCTCACTAACATGTTACTGTTAAACTTGGCAATATCTGACTT 176488 ||||| || | |||||||| | || ||||| | || | ||| |||| || |||||| | Sbjct 16577261 ATACAAGAGGCTCAAAAACATGACCAACATCTACCTCCTGAACCTGGCCATTTCTGACCT 16577202 Query 176489 GCTATTTCTTTTAACTTTGCCATTTTGGATGCACTATAT-TGGAATGTATCATGATTGGA 176547 ||| || || || || |||| || ||| |||| | | || | |||| |||| Sbjct 16577201 GCTCTTCCTGTTCACACTGCCCTTCCTGATCTACTACAAGTCGACAG----ATGACTGGA 16577146 Query 176548 CTTTTGGTATTTCCCTGTGTAAACTGCTCAGGGGTGTGTGTTACATGTCACTGTACAGCC 176607 ||||||| | || ||||||| | ||| || | | ||||| |||||||| Sbjct 16577145 TTTTTGGTGATGCCATGTGTAAGATCCTCTCTGGGTTTTATTACACAGGCTTGTACAGCG 16577086 Query 176608 AGGTCTTTTGCATCATCCTGCTAACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAA 176667 || |||||| |||||||||||| || | |||||||| || || | ||| |||| || Sbjct 16577085 AGATCTTTTTCATCATCCTGCTGACGATTGACAGGTACCTGGCCATCGTCCATGCCGTGT 16577026 Query 176668 CTGCTTTGAGG 176678 ||| |||||| Sbjct 16577025 TTGCCTTGAGG 16577015 Score = 96.9 bits (106), Expect = 4e-15 Identities = 173/251 (69%), Gaps = 5/251 (2%) Strand=Plus/Minus Query 9543 ATACATGAAGATCAAAAACCTCACTAACATGTTACTGTTAAACTTGGCAATATCTGACTT 9602 ||||| || | |||||||| | || ||||| | || | ||| |||| || |||||| | Sbjct 16577261 ATACAAGAGGCTCAAAAACATGACCAACATCTACCTCCTGAACCTGGCCATTTCTGACCT 16577202 Query 9603 GCTATTTCTTTTAACTTTGCCATTTTGGATGCACTATAT-TGGAATGTATCATGATTGGA 9661 ||| || || || || |||| || ||| |||| | | || | |||| |||| Sbjct 16577201 GCTCTTCCTGTTCACACTGCCCTTCCTGATCTACTACAAGTCGACAG----ATGACTGGA 16577146 Query 9662 CTTTTGGTATTTCCCTGTGTAAACTGCTCAGGGGTGTGTGTTACATGTCACTGTACAGCC 9721 ||||||| | || ||||||| | ||| || | | ||||| |||||||| Sbjct 16577145 TTTTTGGTGATGCCATGTGTAAGATCCTCTCTGGGTTTTATTACACAGGCTTGTACAGCG 16577086 Query 9722 AGGTCTTTTGCATCATCCTGCTAACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAA 9781 || |||||| |||||||||||| || | |||||||| || || | ||| |||| || Sbjct 16577085 AGATCTTTTTCATCATCCTGCTGACGATTGACAGGTACCTGGCCATCGTCCATGCCGTGT 16577026 Query 9782 CTGCTTTGAGG 9792 ||| |||||| Sbjct 16577025 TTGCCTTGAGG 16577015 >seq225 Length=41818005 Score = 174 bits (192), Expect = 2e-38 Identities = 133/157 (85%), Gaps = 3/157 (2%) Strand=Plus/Plus Query 138082 CAGCGCCTCAGCCTCACCCTGAGGGTTTTGAGCTTTTCCCCCAGGGAGTTCACTTTATCC 138141 ||||||| |||||||| ||||||||| || || || ||||||||||||||||| | ||| Sbjct 37295572 CAGCGCCGCAGCCTCAGCCTGAGGGTCTTCAGATTCTCCCCCAGGGAGTTCACATGCTCC 37295631 Query 138142 TTTTCCTGGTCGGTGCTGTGGTTCTCGGCCTGGGGCATCACCTCCTCCAGGTAAAACTGG 138201 || ||| | | ||||||||| || |||||||||||||||||||||||||||||| Sbjct 37295632 TTGAT---GTCTGGGTCGTGGTTCTCAGCTTGGGGCATCACCTCCTCCAGGTAAAACTGG 37295688 Query 138202 ATCATCTCAGACAGGGCCTGGCAGCCCAGGTAACCCT 138238 ||||||||||||| ||| ||||| ||||||||||||| Sbjct 37295689 ATCATCTCAGACAAGGCTTGGCAACCCAGGTAACCCT 37295725 Score = 120 bits (132), Expect = 4e-22 Identities = 84/96 (88%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 137921 CTCAGTTTTTCATCTTTGTGGTCATGTAGGCCTCTATGTAGTTAATGAAGATGTCAAACT 137980 ||||||||| ||||| | ||||||||||| ||||||||||| |||||||||||||||| Sbjct 37293233 CTCAGTTTTGTATCTTCATTGTCATGTAGGCTTCTATGTAGTTGATGAAGATGTCAAACT 37293292 Query 137981 CGCTCATGGCCTTGTAGACCCCTTTTTCCTGGAGCT 138016 | |||||||| |||||||| ||||| || ||||||| Sbjct 37293293 CACTCATGGCTTTGTAGACGCCTTTCTCTTGGAGCT 37293328 >seq59 Length=9163144 Score = 156 bits (172), Expect = 5e-33 Identities = 131/161 (81%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 145750 AGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGC 145809 |||||||||| ||| || | |||||| || ||||||| ||||||||| |||||||| ||| Sbjct 409651 AGGCCCGTGATGTGCGCAATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGC 409710 Query 145810 ACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCC 145869 || || || |||||||| ||||| | |||||||||||||||||| ||||| | | | || Sbjct 409711 ACACCTAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTTCACC 409770 Query 145870 ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCAT 145910 || ||||||||||| || ||||| || ||||| ||||| Sbjct 409771 ACATAGAACTGGCAGAGAGCATGGCATGGAGGCAGTGCCAT 409811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590005009781320