Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20nemestrina_20[refseq_20GCF_5F000956065.1_202015-03-19] 9,733 sequences; 2,948,703,511 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq758 118 9e-22 seq3 102 7e-17 seq2225 91.5 1e-13 seq7292 89.7 4e-13 seq7002 87.8 2e-12 seq892 82.4 6e-11 seq891 82.4 6e-11 >seq758 Length=2790677 Score = 118 bits (130), Expect = 9e-22 Identities = 154/212 (73%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| |||| || |||||||| || ||||| ||||| | || || || | || Sbjct 2565655 AGGACCAGGTGCAGGGTTGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCT 2565596 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||| ||| | || || ||||||||||| ||| | |||||| || || Sbjct 2565595 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCTTCTTTATCC 2565536 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | ||| || |||| ||||||| |||| ||| |||||| Sbjct 2565535 TGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCC-ACTCCAGGGTGATGGTC 2565477 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||||||| | ||||| || || || ||||| Sbjct 2565476 TTGCCGGTCAGGGTTTTCACGAAGATCTGCAT 2565445 Score = 113 bits (124), Expect = 4e-20 Identities = 146/202 (72%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || ||||| || || ||||| ||||| | || || || | || |||||||| ||||| Sbjct 2565184 GTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 2565125 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || || ||||||||||| ||| | ||||||||| || ||| || ||| Sbjct 2565124 GCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTATCCTGGATTTTGGCCTTC 2565065 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | ||| || |||| ||||||| || | ||| |||||||||||||| | || Sbjct 2565064 ACATTTTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTTGCCGGTCAGGGTC 2565005 Query 21159 TTGACAAATATTTGCATTTTGA 21180 || || || || |||||||||| Sbjct 2565004 TTCACGAAGATCTGCATTTTGA 2564983 Score = 82.4 bits (90), Expect = 6e-11 Identities = 143/203 (70%), Gaps = 5/203 (2%) Strand=Plus/Minus Query 20973 TGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGT 21032 |||| || ||||| || || ||||| ||||| | || || || | || |||||||| Sbjct 2565417 TGCAGGGTCGACTC-TTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGC 2565359 Query 21033 TTGCCCGCATAAATAAGTCTCTGCTGGTC-CACGGGCACGCCTTCCTTGTCGGCGATCTT 21091 ||||| ||| | || || ||||||||||| ||| | ||||||||| || ||| || Sbjct 2565358 TTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGGAATGCCTTCCTTATCCTGGATTTT 2565299 Query 21092 TTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGT 21151 ||||| | ||| || |||| |||| || || | ||| ||||||||||||| Sbjct 2565298 GGCCTTCACATTTTCGATGGTGTCACTGGGCACC--CTCAAGGGTGATGGTCTTGCCGG- 2565242 Query 21152 TAACGTTTTGACAAATATTTGCA 21174 | | || || || || || |||| Sbjct 2565241 TCAGGTCTTCACGAAGATCTGCA 2565219 >seq3 Length=16319837 Score = 102 bits (112), Expect = 7e-17 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 20966 CACCATA--TGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| |||| |||||||| || || ||||| ||||| | |||||| | | || Sbjct 4626403 CACCATAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 4626344 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| || || ||| | || || ||||||||||| || | ||||||||| || Sbjct 4626343 TCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTTATCT 4626284 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||||||| || || | | | || |||| |||||| || | ||| |||||| Sbjct 4626283 TGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTC 4626224 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 ||||| || | || || || || || |||||| Sbjct 4626223 TTGCCAGTCAGGGTCTTCACGAAGATCTGCATT 4626191 Score = 89.7 bits (98), Expect = 4e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| |||| ||||||||| || || ||||| ||||| | |||||| | | || Sbjct 4628612 AGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCT 4628553 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 ||||||||||| || ||| | || | ||||||||||| || | |||||||||||| Sbjct 4628552 TCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCC 4628493 Query 21084 GCGATCTTT 21092 ||||||| Sbjct 4628492 TGGATCTTT 4628484 Score = 86.0 bits (94), Expect = 5e-12 Identities = 162/237 (68%), Gaps = 1/237 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| ||| | ||||||| |||| |||||||| || || ||||| ||||| | Sbjct 14926625 CCACCTCACAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTCTAGTCTGAG 14926566 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || | || | |||||| |||||||||||||| | || || | ||||||||| | Sbjct 14926565 AGACTGCGGCCATCCTCCGGCTGTTTGCCCGCAAATATCAGACACTGCTGGTCAGGCAGG 14926506 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| | |||||| ||| | ||| || | | || || | ||||||| Sbjct 14926505 ATGCCCTACTTGTCTTGGATTTCGGCTTTGACATTCTCAGTGGTGTCCCTGGGCTCCACC 14926446 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT-TTTGAATCT 21184 || | ||| ||||||||||| | | || || ||||| || ||||| | ||| ||| Sbjct 14926445 TCAAGGGTGATGGTCTTGCCCATGAGGGTGTTCACAAAGATCTGCATCTCTGAGTCT 14926389 >seq2225 Length=31540782 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/205 (71%), Gaps = 6/205 (3%) Strand=Plus/Minus Query 20973 TGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGT 21032 |||| || |||||||| || ||||| ||||| | || || || | | |||||||| Sbjct 23425389 TGCAGGGTTGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCAT--TCCAGCTGC 23425332 Query 21033 TTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTG-TCGGCGATCTT 21091 ||||| ||| | || || |||||||||| ||| | ||||||||| || |||||| Sbjct 23425331 TTGCCTGCAAAGATGAGCCTCTGCTGGTTGGGGGGGATGCCTTCCTTTATCCTGGATCTT 23425272 Query 21092 TTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGT-TTCCACGGTAATGGTCTTGCCGG 21150 ||||| | ||| || |||| ||||||| ||||| ||| |||||||||||| Sbjct 23425271 GGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTTCCAGGGTGATGGTCTTGCCG- 23425213 Query 21151 TTAACGTTTTGACAAATATTTGCAT 21175 | | | ||| || || || ||||| Sbjct 23425212 -TCAGGGTTTCACGAAGATCTGCAT 23425189 >seq7292 Length=2378 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || ||| |||| | |||||||| |||| ||||||||| || || ||||| ||||| | Sbjct 1046 CCACCTTGCAGGCGCAGCACCATGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCTGAG 987 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | | ||||||||||||||||||||| || || ||||||||| || Sbjct 986 AGAGTGCAGCCATCCTCCAGCTGTTTGCCCGCAAGTATCAGATGCTGCTGGTCAGGTGGG 927 Query 21069 ACGCCTTCCTTGTC 21082 | ||| |||||||| Sbjct 926 ATGCCCTCCTTGTC 913 >seq7002 Length=12659153 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/230 (69%), Gaps = 1/230 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||||||| | | ||||| |||| |||||||| || || ||||| ||||| | Sbjct 9467041 CCACCTCGCAGGCGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAG 9467100 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | || |||||||||||||| ||| | || || | ||||||||| || Sbjct 9467101 AGAGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGG 9467160 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| || || ||| || | | | || |||| |||||| Sbjct 9467161 ATACCCTCCTTGTCTTGAATTTTGGCTTTGACAT-TCTCATGGTGTCACTGGGCTCGACC 9467219 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178 | | ||| ||||| ||||| || | || || ||||| || ||||| || Sbjct 9467220 TTGAGGGTGATGGTTTTGCCCGTGAGGGTCTTCACAAAGATCTGCATGTT 9467269 >seq892 Length=8016392 Score = 82.4 bits (90), Expect = 6e-11 Identities = 139/200 (70%), Gaps = 1/200 (1%) Strand=Plus/Minus Query 20982 GACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCA 21041 ||||| || |||||||| ||||| | || || | | || || ||| | ||||| || Sbjct 5021616 GACTCTTTCTGAATGTTGTAGTCAGAAAGAGTGCAGCCATCTTCTAGCCGCTTGCCTACA 5021557 Query 21042 TAAATAAGTCTCTGCTGGTCCACGGGC-ACGCCTTCCTTGTCGGCGATCTTTTGTTTCAC 21100 | || || ||||||||||| ||| | |||||| || || |||||| ||||| Sbjct 5021556 AAGATGAGACTCTGCTGGTCAGTGGGGGATGCCTTCTTTATCCTGGATCTTGGCCTTCAC 5021497 Query 21101 CTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTT 21160 | || | |||| ||||||| |||| || ||||||||||||| | ||||| Sbjct 5021496 ATTTTGGAGGATGTCACTGGGCTCCACCTCCAGGGAGATGGTCTTGCCGGGCAGGGTTTT 5021437 Query 21161 GACAAATATTTGCATTTTGA 21180 | || ||||||||||||| Sbjct 5021436 CAGGAAGATTTGCATTTTGA 5021417 >seq891 Length=31049660 Score = 82.4 bits (90), Expect = 6e-11 Identities = 143/208 (69%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 20973 TGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGT 21032 |||| || ||||| || || ||||||||||| | || | || | || |||| ||| Sbjct 21157924 TGCAGGGTCGACTCTTTCTGGATGTTATAGTCAGAAAGAATGCGGTCATCTTCCACCTGC 21157983 Query 21033 TTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTT 21092 ||| | ||| || || ||||||| || | | | ||||||||| || |||||| Sbjct 21157984 TTGACTGCAAGGATGAGCGTCTGCTGCTCGGGGAGAATGCCTTCCTTATCCTGGATCTTG 21158043 Query 21093 TGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTT 21152 ||||| | ||| || |||| ||||||| || | || ||||||||||| ||| Sbjct 21158044 GCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCAAGGGCAATGGTCTTGCAGGTA 21158103 Query 21153 AACGTTTTGACAAATATTTGCATTTTGA 21180 | | || || || || |||||||||| Sbjct 21158104 AGGCTCTTCACGAAGATCTGCATTTTGA 21158131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422209111217828