Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20nemestrina_20[refseq_20GCF_5F000956065.1_202015-03-19] 9,733 sequences; 2,948,703,511 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq1670 107 2e-18 seq9446 95.1 1e-14 >seq1670 Length=4706099 Score = 107 bits (118), Expect = 2e-18 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 25030 TAAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAAC 25089 ||||| |||| || ||| | ||||| | ||||| || ||||| ||| ||| |||| Sbjct 2974019 TAAAAGTGCAGATTTTCGTGAAAACCCTCACGGGGAAGACCATCACCCTCGAGGTTGAAC 2974078 Query 25090 CCGCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAG 25149 || | || ||| | | || | ||| || || ||||| ||||| | || | Sbjct 2974079 CCTCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTG 2974138 Query 25150 ATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATT 25209 |||| |||||||| |||||||| ||||| || |||||||| ||| || | || | Sbjct 2974139 ATCAGCAAAGACTGATCTTTGCTGGCAAGCACCTGGAAGATGGACGTACTTTGTCTGACT 2974198 Query 25210 ACAATATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246 |||||||||||||||| ||||||||||| | ||||| Sbjct 2974199 ACAATATTCAAAAGGAGTCTACTCTTCATCTTGTGTT 2974235 >seq9446 Length=14842378 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091 |||||||| || ||| | ||||| | ||||| || ||||| ||| ||| |||||| Sbjct 8609802 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCC 8609861 Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151 | | ||| | | || | ||| || || || || ||||| | || | | Sbjct 8609862 TCGAATACGATAGAAAATGTAAAGGCCAAGATCCAGGAGAAGGAAGGAATTCCTCCTGCT 8609921 Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211 | |||||||| |||||||| ||||| ||| |||||||| ||| || | || ||| Sbjct 8609922 CTGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 8609981 Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246 |||||||||||||| ||||||||||| | ||||| Sbjct 8609982 AATATTCAAAAGGAGTCTACTCTTCATCTTGTGTT 8610016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410748070898462