Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20nemestrina_20[refseq_20GCF_5F000956065.1_202015-03-19] 9,733 sequences; 2,948,703,511 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq7002 91.5 2e-13 seq1299 84.2 3e-11 >seq7002 Length=12659153 Score = 91.5 bits (100), Expect = 2e-13 Identities = 160/232 (69%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| || || |||||||| || || | || | || | | | Sbjct 9467266 ATGCAGATCTTTGTGAAGACCCTCACGGGCAAAACCATCACCCTCAAGGTCGAGCCCAGT 9467207 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || ||| | ||| ||||||||||| || || ||||| |||||||| || Sbjct 9467206 GACACCATGAG-AATGTCAAAGCCAAAATTCAAGACAAGGAGGGTATCCCACCTGACCAG 9467148 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | || || ||||| || ||||| | || ||| | || || | ||| || || Sbjct 9467147 CAGCGTCTGATATTTGCCGGCAAACAGCTGGAAGATGGCCGCACTCTCTCAGACTACAAC 9467088 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTA 124770 || || ||||| || || |||| |||| || || | |||||||| |||| Sbjct 9467087 ATCCAGAAAGAGTCCACCCTGCACCTGGTGTTGCGCCTGCGAGGTGGCATTA 9467036 >seq1299 Length=15376 Score = 84.2 bits (92), Expect = 3e-11 Identities = 138/198 (70%), Gaps = 1/198 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| || || ||||| || || || | |||||||| | | | Sbjct 1725 ATGCAGATCTTTGTGAAGACCCTCACGGGCAAGACCATCACCCTTGAGATTGAGCCCAGT 1784 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGG-TATACCACCTGATCA 124657 || || |||| ||| | ||| ||||||||||| || || || ||| |||||||| || Sbjct 1785 GACACCATTTAGAATGTCAAAGCCAAAATTCAAGACAAGGAGGGATATCCCACCTGACCA 1844 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || | || || |||| || ||||| | |||||| | || || | || || || Sbjct 1845 GCAGCGTCTGATACTTGCTGGGAAACAGCTGGAGGATGGCCGCACTCTCTCAGGCTACAA 1904 Query 124718 TATTCAAAAAGAATCAAC 124735 || || ||||| || || Sbjct 1905 CATCCAGAAAGAGTCCAC 1922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755364089334400