Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20nemestrina_20[refseq_20GCF_5F000956065.1_202015-03-19] 9,733 sequences; 2,948,703,511 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq7002 134 1e-26 seq7446 118 9e-22 seq758 113 4e-20 seq5557 111 1e-19 seq1299 104 2e-17 seq7292 96.9 3e-15 seq1470 96.9 3e-15 seq1226 93.3 4e-14 seq9446 87.8 2e-12 seq547 87.8 2e-12 >seq7002 Length=12659153 Score = 134 bits (148), Expect = 1e-26 Identities = 159/214 (74%), Gaps = 1/214 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 |||||||| ||| | || |||||||| || |||||||| || | |||||| ||| Sbjct 9467055 CAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCATC 9467114 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || |||||||| || || | || ||||||||||| || || || || ||||||||||| Sbjct 9467115 TTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTC 9467174 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 | |||||| ||| || | || | |||||| || |||||||| || ||| | || Sbjct 9467175 TTGAATTTTGGCTTTGACATTCTC-ATGGTGTCACTGGGCTCGACCTTGAGGGTGATGGT 9467233 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 |||||| || || || || ||||| ||||||||| Sbjct 9467234 TTTGCCCGTGAGGGTCTTCACAAAGATCTGCATG 9467267 >seq7446 Length=17224310 Score = 118 bits (130), Expect = 9e-22 Identities = 155/214 (72%), Gaps = 3/214 (1%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 |||||||| ||| | || ||||||| | |||||||| || | |||||| ||| Sbjct 13346901 CAACACCAGGTGCAGGGTGGACTCTT---GGATGTTGTAGTCTGAGAGAGTGCGGCCATC 13346957 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || |||||||| | || | || ||||||||||| || || || || ||||||||||| Sbjct 13346958 TTCCAGCTGTTTGCTGGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTC 13347017 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 | |||||| ||| || | || | |||||| || ||||||||| | ||| | || Sbjct 13347018 TTGAATTTTGGCTTTGACGTTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGT 13347077 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 |||||| | || || || ||||| ||||||||| Sbjct 13347078 TTTGCCCGGGAGGGTCTTCACAAAGATCTGCATG 13347111 >seq758 Length=2790677 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || |||||||| || |||||||| || | |||||| ||| || ||||| || || Sbjct 2565184 GTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 2565125 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || ||||||| | |||||| ||||| || ||||| ||||| || ||||| || Sbjct 2565124 GCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTATCCTGGATTTTGGCCTTC 2565065 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | ||||| |||||| || ||| ||||| | ||| | || ||||||||||| || Sbjct 2565064 ACATTTTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTTGCCGGTCAGGGTC 2565005 Query 118722 TTTACAAAAATCTGCAT 118738 || || || |||||||| Sbjct 2565004 TTCACGAAGATCTGCAT 2564988 Score = 98.7 bits (108), Expect = 9e-16 Identities = 148/209 (71%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || ||||| || || |||||||| || | |||||| ||| || Sbjct 2565652 ACCAGGTGCAGGGTTGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCC 2565593 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || || ||||||| | |||||| ||||| || ||||| || || || Sbjct 2565592 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCTTCTTTATCCTGG 2565533 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | ||||| |||||| || ||| || || | ||| | || ||| Sbjct 2565532 ATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCAC-TCCAGGGTGATGGTCTTG 2565474 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||| ||||| || || |||||||| Sbjct 2565473 CCGGTCAGGGTTTTCACGAAGATCTGCAT 2565445 >seq5557 Length=63123227 Score = 111 bits (122), Expect = 1e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 118545 GACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCG 118604 |||||||| || |||||| | || | |||||| |||||| |||||||| || || Sbjct 51838199 GACTCTTTCTGGATGTTGCAGTCTGAGAGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCA 51838258 Query 118605 TAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACC 118664 | || ||||||||||| || | || |||||||||||| || |||||| || || Sbjct 51838259 AATATCAGACGCTGCTGGTCAAGTGGGATGCCCTCCTTGGCTTGAATTTTGGCCTTGACA 51838318 Query 118665 TGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTT 118724 | || |||||| || ||||||||||| ||| | || ||||| || || || || Sbjct 51838319 TTCTCAGTGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCTGTGAGGGTCTTC 51838378 Query 118725 ACAAAAATCTGCAT 118738 ||||| |||||||| Sbjct 51838379 ACAAAGATCTGCAT 51838392 >seq1299 Length=15376 Score = 104 bits (114), Expect = 2e-17 Identities = 152/214 (71%), Gaps = 1/214 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| || | || |||||||| || |||||||| | | |||||| ||| Sbjct 1938 CAGCACCAGGTTTAGGGTGGACTCTTTCTGGATGTTGTAGCCTGAGAGAGTGCGGCCATC 1879 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTAT-GCCCTCCTTGT 118644 ||| |||||||| ||||| || ||||||||||| || || || || |||||||||| Sbjct 1878 CTCCAGCTGTTTCCCAGCAAGTATCAGACGCTGCTGGTCAGGTGGGATATCCCTCCTTGT 1819 Query 118645 CTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCG 118704 || |||||| ||| || | | | |||||| || ||| | ||| | ||| | | Sbjct 1818 CTTGAATTTTGGCTTTGACATTCTAAATGGTGTCACTGGGCTCAATCTCAAGGGTGATGG 1759 Query 118705 TTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | ||||| || || || || ||||| |||||||| Sbjct 1758 TCTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 1725 >seq7292 Length=2378 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| ||| | || |||||||| || |||||||| || | ||||| ||| Sbjct 1032 CAGCACCATGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGAGTGCAGCCATC 973 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| |||||||| || || || ||| ||||||| || || || |||||||||||||| Sbjct 972 CTCCAGCTGTTTGCCCGCAAGTATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTC 913 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 | |||||| || || | || |||||| || ||||| ||| | |||| Sbjct 912 TTGAATTTTGGCGTTGACATTCTCAGTGGTGTCACTGGGCTCGATCTCAAAGGTC----- 858 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || || || || ||||| ||||||| Sbjct 857 -TTGCCTGTGAGGGTCTTCACAAAGGTCTGCAT 826 >seq1470 Length=5179915 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| || || |||| |||||| |||||||| || | ||||| |||||| Sbjct 4406603 ACCAGGTGCATGGTGGACTGTTTTTGGATGTTGTAGTCTGAGAGAGTGCAGCCATCCTCC 4406662 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || ||||| | || ||||||||||| || || || || ||||| |||||| | Sbjct 4406663 AGCTGCTTGCCAGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCTTTGTCTTGA 4406722 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 ||||| ||| | | || ||||| || ||||||||| | | | | || ||| Sbjct 4406723 ATTTTGGCTTTGAAATTCTCAGTGGTGTAACTGGGCTCGACCTCAAGGATGATGGTCTTG 4406782 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCA 118737 || || || || | ||||| | ||||| Sbjct 4406783 CCCGTGAGGGTCTCCACAAAGAGCTGCA 4406810 >seq1226 Length=1830524 Score = 93.3 bits (102), Expect = 4e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| || | || |||||||| || ||||| ||||| | |||| | |||||| Sbjct 1001447 CACCACCTGCAGGGTGGACTCTTTCTGGATGTTATAATCTGAAAGAGTGTGGCCATCCTC 1001388 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 | |||||| || | | || ||| ||||||| || || || |||||||||||||| Sbjct 1001387 CAACTGTTTGCCCACAAATATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCATG 1001328 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || ||| || | ||| |||||| || || |||||| | ||| | ||| | Sbjct 1001327 GATCTTGGCTTTGACATTTTCACTGGTGTCACTGGGCTGGACCTCAAAGGTGATGGTTCT 1001268 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 || || || || |||||| | ||||||||| || Sbjct 1001267 TCCTGTGAGGGTCTTTACAGAGATCTGCATGTCT 1001234 >seq9446 Length=14842378 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| || || | ||||||||| | || | |||||||| |||||||| ||||| || Sbjct 8610032 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGA 8609973 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || ||| || ||| || || || || ||||| |||| || | ||| || | ||||| Sbjct 8609972 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCAGAGCAGGAGG 8609913 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || || ||||| || || || || || | ||| | || | || | || || Sbjct 8609912 AATTCCTTCCTTCTCCTGGATCTTGGCCTTTACATTTTCTATCGTATTCGAGGGTTCAAC 8609853 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| ||| | || || || || || ||||| || ||||||||||| Sbjct 8609852 CTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 8609805 >seq547 Length=9034655 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| ||| | || ||||||| |||| ||| || | ||| || ||| Sbjct 8022860 CAGCACCAGGTGCAGGGTGGACTCTTCCCAGATGTCGTAGTCTGAGAGAGTTCGGCCATC 8022801 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| |||||||| || || || ||| ||||||| || || || || ||||||||||| Sbjct 8022800 CTCCAGCTGTTTGCCGGCAAGTATCAGATGCTGCTGGTCAGGTGGGATACCCTCCTTGTC 8022741 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 | |||||| ||| || | || |||||| || || |||||| | || | || Sbjct 8022740 TTGAATTTTGGCTTTGACATCCTCATTGGTGTCACTGGGCTTGACCTCAAGAGTGATGGT 8022681 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || || || || ||||| |||||||| Sbjct 8022680 CTTGCCCGTAAGGGTCTTCACAAAGATCTGCAT 8022648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433778938631236