Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20nemestrina_20[refseq_20GCF_5F000956065.1_202015-03-19] 9,733 sequences; 2,948,703,511 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq7002 122 1e-22 seq7446 109 6e-19 seq781 105 8e-18 seq1447 102 9e-17 seq758 100 3e-16 seq3 100 3e-16 seq9557 98.7 1e-15 seq892 98.7 1e-15 seq312 98.7 1e-15 seq114 93.3 5e-14 seq1858 91.5 2e-13 seq5557 84.2 3e-11 seq7779 82.4 9e-11 seq1670 82.4 9e-11 seq1470 82.4 9e-11 seq1299 82.4 9e-11 >seq7002 Length=12659153 Score = 122 bits (134), Expect = 1e-22 Identities = 163/223 (73%), Gaps = 3/223 (1%) Strand=Plus/Plus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||||||||| |||| ||| ||| || || || ||||| || | ||||| || | Sbjct 9467053 CGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCA 9467112 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || ||||| || || || ||||| || ||||||||||| | || | | ||||||| Sbjct 9467113 TCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTG 9467172 Query 43089 TCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 | | ||| |||| | ||||| | | || ||||| || | || || | || ||||| Sbjct 9467173 T-CTTGAATTTTGGCTTTGA-CATTCTCATGGTGTCACTGGGCTCGACCTTGAGGGTGAT 9467230 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTTACG 43190 |||||||||||| || ||||| |||||||| ||||| ||| || Sbjct 9467231 GGTTTTGCCCGTGAGGGTCTTCACAAAGATCTGCATGTTTGCG 9467273 >seq7446 Length=17224310 Score = 109 bits (120), Expect = 6e-19 Identities = 160/223 (72%), Gaps = 5/223 (2%) Strand=Plus/Plus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||||||||| |||| ||| ||| ||| || ||||| || | ||||| || | Sbjct 13346899 CGCAACACCAGGTGCAGGGTGGACTC---TTGGATGTTGTAGTCTGAGAGAGTGCGGCCA 13346955 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || ||||| || | || ||||| || ||||||||||| | || | | ||||||| Sbjct 13346956 TCTTCCAGCTGTTTGCTGGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTG 13347015 Query 43089 TCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 | | ||| |||| | ||||| || | | ||||| || | || || || | ||||| Sbjct 13347016 T-CTTGAATTTTGGCTTTGACGTTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGAT 13347074 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTTACG 43190 ||||||||||| || ||||| |||||||| ||||| ||| || Sbjct 13347075 GGTTTTGCCCGGGAGGGTCTTCACAAAGATCTGCATGTTTGCG 13347117 >seq781 Length=2996164 Score = 105 bits (116), Expect = 8e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121 |||||||| || | ||||||||||||| ||||||||||||||||||||| ||||||||| Sbjct 2459494 TTTTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACC 2459553 Query 60122 ACTATACTACCGAGGA 60137 ||||||||| |||||| Sbjct 2459554 ACTATACTAACGAGGA 2459569 Score = 102 bits (112), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121 || ||||| || | ||||||||||||| ||||||||||||||||||||| ||||||||| Sbjct 2377979 TTGTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACC 2377920 Query 60122 ACTATACTACCGAGGA 60137 ||||||||| |||||| Sbjct 2377919 ACTATACTAACGAGGA 2377904 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 2485645 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 2485704 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 2485705 TACTAACGAGGA 2485716 >seq1447 Length=14421193 Score = 102 bits (112), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121 || ||||| || | ||||||||||||| ||||||||||||||||||||| ||||||||| Sbjct 12537955 TTATCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACC 12537896 Query 60122 ACTATACTACCGAGGA 60137 ||||||||| |||||| Sbjct 12537895 ACTATACTAACGAGGA 12537880 Score = 95.1 bits (104), Expect = 1e-14 Identities = 65/72 (90%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 12481894 CTCCCCGTC-GGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 12481952 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 12481953 TACTAACGAGGA 12481964 >seq758 Length=2790677 Score = 100 bits (110), Expect = 3e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||| || || || ||||| |||| ||||| || | || || |||||||| || || || Sbjct 2565179 CTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAA 2565120 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| | ||||||||||| || | || ||||| ||| |||||| || | | Sbjct 2565119 GATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTATCCTGGATTTTGGCCTTCACATT 2565060 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | ||||| || | ||||| || | |||||||| ||||| || || ||||| || Sbjct 2565059 TTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 2565000 Query 43172 AAAGATTTGCATTTTTAC 43189 ||||| |||||||| || Sbjct 2564999 GAAGATCTGCATTTTGAC 2564982 Score = 82.4 bits (90), Expect = 9e-11 Identities = 148/215 (69%), Gaps = 1/215 (0%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| |||| |||| || |||||| || || ||||| |||| ||||| || | Sbjct 2565658 CGCAGGACCAGGTGCAGGGTTGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCA 2565599 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| || || || ||||| | ||||||||||| || | || || || Sbjct 2565598 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCTTCTTTA 2565539 Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148 ||| ||| || || | | | | ||||| || | ||||| || | |||||| Sbjct 2565538 TCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCAC-TCCAGGGTGATG 2565480 Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || ||||| || || || || || ||||| ||||| Sbjct 2565479 GTCTTGCCGGTCAGGGTTTTCACGAAGATCTGCAT 2565445 >seq3 Length=16319837 Score = 100 bits (110), Expect = 3e-16 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 42970 GCAACACCAAA--TGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 || |||||| | |||| ||| ||| || || || ||||| |||| ||| || ||| | Sbjct 4626407 GCGACACCATAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCC 4626348 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| || || || || || | ||||||||||| || | || ||||| Sbjct 4626347 ATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTT 4626288 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 || ||| ||| |||| || | | ||||| || | || || || | ||||| Sbjct 4626287 ATCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGAT 4626228 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 ||| ||||| || || ||||| || ||||| |||||| Sbjct 4626227 GGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATT 4626191 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 4601540 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 4601481 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 4601480 TACTAACGAGGA 4601469 >seq9557 Length=14376901 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 4668647 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 4668706 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 4668707 TACTAACGAGGA 4668718 >seq892 Length=8016392 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 7718524 CTCCCCGTCGGGGAATCGAACCCAGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 7718583 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 7718584 TACTAACGAGGA 7718595 >seq312 Length=11236 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 4835 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 4894 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 4895 TACTAACGAGGA 4906 >seq114 Length=10248520 Score = 93.3 bits (102), Expect = 5e-14 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| | | ||||||||||| | |||||||||||||||||| || ||||||||||| Sbjct 9027964 TTCTCCCCCTCGGGGAATCGAACGCCGGTCTCCCGCGTGACAGGTGGGGATACTCACCAC 9028023 Query 60124 TATACTACCGAGGATTGAA 60142 ||||||| |||||| |||| Sbjct 9028024 TATACTAACGAGGAGTGAA 9028042 >seq1858 Length=1961964 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 502212 TCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 502153 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 502152 ATACTAACGAGGA 502140 >seq5557 Length=63123227 Score = 84.2 bits (92), Expect = 3e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||| || || || ||| | || | ||||| || | || || ||||| || || || || Sbjct 51838201 CTCTTTCTGGATGTTGCAGTCTGAGAGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAA 51838260 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 ||| || ||||||||||| || | || ||||||| | ||| |||| | |||| Sbjct 51838261 TATCAGACGCTGCTGGTCAAGTGGGATGCCCTCCTTG-GCTTGAATTTTGGCCTTGACAT 51838319 Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 || | ||||| || | || || |||| |||||||| ||||| || || ||||| | Sbjct 51838320 TCTCAGTGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCTGTGAGGGTCTTCA 51838379 Query 43171 CAAAGATTTGCAT 43183 ||||||| ||||| Sbjct 51838380 CAAAGATCTGCAT 51838392 >seq7779 Length=26856881 Score = 82.4 bits (90), Expect = 9e-11 Identities = 53/57 (93%), Gaps = 1/57 (2%) Strand=Plus/Plus Query 60074 CAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 60130 |||||||| ||||| |||||||||||||||||||||| |||||||||||||||||| Sbjct 4496760 CAGGGAATTGAACC-TGGTCTCCCGCGTGACAGGCGGGAATACTCACCACTATACTA 4496815 >seq1670 Length=4706099 Score = 82.4 bits (90), Expect = 9e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 42971 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 43030 |||||| | ||| | || |||||||||||||||||| |||| || ||| || | || Sbjct 2974236 CAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATC 2974177 Query 43031 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 43090 || || ||||| ||||| || || |||| ||||| || | || | | ||||| || Sbjct 2974176 TTCCAGGTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 2974117 Query 43091 CATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGT 43150 | ||| || || | | | | ||| || | ||| || |||| |||||||| Sbjct 2974116 CTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTGATGGT 2974057 Query 43151 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTTA 43188 || ||||| || || || || || || |||| ||||| Sbjct 2974056 CTTCCCCGTGAGGGTTTTCACGAAAATCTGCACTTTTA 2974019 >seq1470 Length=5179915 Score = 82.4 bits (90), Expect = 9e-11 Identities = 145/209 (69%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 |||| |||| ||| || ||||| || ||||| || | ||||| | | || || Sbjct 4406603 ACCAGGTGCATGGTGGACTGTTTTTGGATGTTGTAGTCTGAGAGAGTGCAGCCATCCTCC 4406662 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 |||||||| ||||| ||||| || ||||||||||| | || | | ||| |||| | || Sbjct 4406663 AGCTGCTTGCCAGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCTTTGT-CTTG 4406721 Query 43095 ATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 | |||| | ||||| || | |||| || | || || || | ||||||| || Sbjct 4406722 AATTTTGGCTTTGAAATTCTCAGTGGTGTAACTGGGCTCGACCTCAAGGATGATGGTCTT 4406781 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCA 43182 |||||| || |||| ||||||| |||| Sbjct 4406782 GCCCGTGAGGGTCTCCACAAAGAGCTGCA 4406810 >seq1299 Length=15376 Score = 82.4 bits (90), Expect = 9e-11 Identities = 137/194 (71%), Gaps = 3/194 (2%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||| || || || ||||| | | ||||| || | || || ||||| || ||||| | Sbjct 1917 CTCTTTCTGGATGTTGTAGCCTGAGAGAGTGCGGCCATCCTCCAGCTGTTTCCCAGCAAG 1858 Query 43052 TATGAGTCGCTGCTGGTC-GGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGC 43109 ||| || ||||||||||| || || | |||||||| | ||| |||| | ||||| Sbjct 1857 TATCAGACGCTGCTGGTCAGGTGGGATATCCCTCCTTGT-CTTGAATTTTGGCTTTGACA 1799 Query 43110 GTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 43169 || | ||||| || | || | || | |||||||| |||||||| || ||||| Sbjct 1798 TTCTAAATGGTGTCACTGGGCTCAATCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTC 1739 Query 43170 ACAAAGATTTGCAT 43183 |||||||| ||||| Sbjct 1738 ACAAAGATCTGCAT 1725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571748031241240