Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20nemestrina_20[refseq_20GCF_5F000956065.1_202015-03-19] 9,733 sequences; 2,948,703,511 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq1670 98.7 1e-15 seq9224 95.1 2e-14 seq9446 89.7 8e-13 seq8446 87.8 3e-12 seq4 86.0 9e-12 >seq1670 Length=4706099 Score = 98.7 bits (108), Expect = 1e-15 Identities = 106/138 (77%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | |||||| || || | ||| | |||||| || ||| || ||||| || || || Sbjct 2974250 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATATTGTAGTCAGA 2974192 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||| | | ||| || | || || |||||||| |||| |||||||||||| ||||| Sbjct 2974191 CAAAGTACGTCCATCTTCCAGGTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 2974132 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 2974131 AATTCCTTCCTTATCCTG 2974114 >seq9224 Length=17174830 Score = 95.1 bits (104), Expect = 2e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 10437 GGATGTTATGCAAGATTAGCTCCCAGATCTGATTTAGCTCTAAATAAATTTATTGATATT 10496 || ||||||| |||| ||||||| | || | || ||| ||| | ||||||||| | Sbjct 3229547 GGGTGTTATGGAAGAGTAGCTCCACGGTCAGGCTTGGCTGCAAAACACTTTATTGATGTA 3229488 Query 10497 GGAGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGTAATATTATTTAATCAT 10556 |||||||| || || | |||||||||||||||||||| || || || | |||||| | Sbjct 3229487 GGAGCTGGTGTCATAAATGAAGATTATAGAGGAAATGTTGGTGTTGTACTGTTTAATTTT 3229428 Query 10557 TCTAATGAAGATTTTATAATAAATAGAGGAGATAGAATATCTCAATTAATATGTGAAAAA 10616 || ||| | ||| | | || | || ||| |||| | ||| | || || ||| Sbjct 3229427 GGCAAAGAAAAGTTTGAAGTCAAAAAGGGTGATCGAATTGCACAACTCATTTGCGAACGG 3229368 Query 10617 ATTTTATATCCTAAAAT 10633 ||||| ||||| |||| Sbjct 3229367 ATTTTTTATCCAGAAAT 3229351 >seq9446 Length=14842378 Score = 89.7 bits (98), Expect = 8e-13 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | |||||| || || | ||| | |||||| || ||| || ||||| || || || Sbjct 8610031 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATATTGTAGTCAGA 8609973 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||| | | ||| || | ||| || |||||||| |||| ||||||| || | ||||| Sbjct 8609972 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCAGAGCAGGAGG 8609913 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| || || || Sbjct 8609912 AATTCCTTCCTTCTCCTG 8609895 >seq8446 Length=17995230 Score = 87.8 bits (96), Expect = 3e-12 Identities = 106/139 (76%), Gaps = 4/139 (3%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | |||||| || || | ||| | |||||| || ||| || ||||| || || || Sbjct 4537442 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATATTGTAGTCAGA 4537500 Query 146110 AAGAGTTC-TGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | ||| | ||| ||| || | ||| || |||||||| ||| ||||||||| | |||| Sbjct 4537501 CAAAGTCCATGC-ATCTTCCAGTTGCTTGCCAGCAAAGATCCCCCTTTGCTGAGCAGGAG 4537559 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||||||||| ||||| || Sbjct 4537560 GAATTCCTTCCTTATCCTG 4537578 >seq4 Length=12889960 Score = 86.0 bits (94), Expect = 9e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 10437 GGATGTTATGCAAGATTAGCTCCCAGATCTGATTTAGCTCTAAATAAATTTATTGATATT 10496 || ||||||| |||| ||| ||| | |||| || ||| ||| | ||||||||| | Sbjct 5654563 GGGTGTTATGGAAGAGTAGTTCCATGGTCTGGCTTGGCTGCAAAACACTTTATTGATGTA 5654504 Query 10497 GGAGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGTAATATTATTTAAT 10553 |||||||| || || |||||| |||||||||||||| | || || || | |||||| Sbjct 5654503 GGAGCTGGTGTCATAGACGAAAATTATAGAGGAAATATTGGTGTTGTACTGTTTAAT 5654447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743435940719360