Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20nemestrina_20[refseq_20GCF_5F000956065.1_202015-03-19] 9,733 sequences; 2,948,703,511 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq758 113 3e-20 seq7002 107 1e-18 seq3 93.3 3e-14 seq7446 87.8 1e-12 seq547 82.4 5e-11 >seq758 Length=2790677 Score = 113 bits (124), Expect = 3e-20 Identities = 162/227 (71%), Gaps = 1/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || | ||| | ||| |||||||| | || || ||||| ||||||||||| || Sbjct 2565670 CCACCCCTCAGGCGCAGGACCAGGTGCAGGGTTGACTCCTTCTGGATGTTGTAGTCAGAA 2565611 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || |||| |||||||||||| || ||||||| |||||||||| ||| Sbjct 2565610 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGG 2565551 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || || || || ||||| ||| | || | || | || | | || || Sbjct 2565550 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCAC- 2565492 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| |||||||| || |||||||| ||||||||||| Sbjct 2565491 TCCAGGGTGATGGTCTTGCCGGTCAGGGTTTTCACGAAGATCTGCAT 2565445 Score = 109 bits (120), Expect = 4e-19 Identities = 141/193 (73%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 |||||||| ||||||||||| || || ||| | || |||| |||||||||||| || Sbjct 2565178 TCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAG 2565119 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTG--CTTTAGAT 34316 ||||||| |||||||||| ||| | || ||||| || || ||||| ||| | || Sbjct 2565118 ATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTATC--CTGGATTTTGGCCTTCACAT 2565061 Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376 | || | || | | || || || | |||||||| |||||||| || || |||| Sbjct 2565060 TTTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTTGCCGGTCAGGGTCTTCA 2565001 Query 34377 CAAAGATCTGCAT 34389 | ||||||||||| Sbjct 2565000 CGAAGATCTGCAT 2564988 >seq7002 Length=12659153 Score = 107 bits (118), Expect = 1e-18 Identities = 163/228 (71%), Gaps = 3/228 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | || ||||||||| | || |||||||| ||||||||||| || Sbjct 9467041 CCACCTCGCAGGCGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAG 9467100 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || |||| ||| ||||| || || || || ||||||||||| || Sbjct 9467101 AGAGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGG 9467160 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||||||| || ||| ||||| | || | || | || | | ||||| Sbjct 9467161 ATACCCTCCTTGTCTTGAAT-TTTGGCTTTGACATTCTC-ATGGTGTCACTGGGCTCGAC 9467218 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | | |||||||||||||| ||||| || ||||||||||||||||| Sbjct 9467219 CTTGAGGGTGATGGTTTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 9467266 >seq3 Length=16319837 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 |||||||| ||||||||||| ||||| || | || |||| |||||| || || || Sbjct 4626382 TCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAG 4626323 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || |||| |||||||||| || | || ||||| || |||||| ||| | || Sbjct 4626322 ATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTTATCTTGGATCTTTGCCTTGACATTC 4626263 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | || | | || || || | |||||||| ||||| || || || ||||| Sbjct 4626262 TCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACG 4626203 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 4626202 AAGATCTGCAT 4626192 >seq7446 Length=17224310 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/228 (69%), Gaps = 5/228 (2%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | || ||||||||| | || |||| | ||||||||||| || Sbjct 13346887 CCACCTCGCAGGCGCAACACCAGGTGCAGGGTGGACTCTT---GGATGTTGTAGTCTGAG 13346943 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || |||| ||| |||| || || || || ||||||||||| || Sbjct 13346944 AGAGTGCGGCCATCTTCCAGCTGTTTGCTGGCAAATATCAGACGCTGCTGGTCAGGTGGG 13347003 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||||||| || ||| ||||| | | | || | || | | ||||| Sbjct 13347004 ATACCCTCCTTGTCTTGAAT-TTTGGCTTTGACGTTCTCAATGGTGTCACTGGGCTCGAC 13347062 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||||||||| | ||| || ||||||||||||||||| Sbjct 13347063 CTCAAGGGTGATGGTTTTGCCCGGGAGGGTCTTCACAAAGATCTGCAT 13347110 >seq547 Length=9034655 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | |||||||||||| | || |||| | |||| |||||| || Sbjct 8022874 CCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTCCCAGATGTCGTAGTCTGAG 8022815 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || |||| ||| ||||| || | || || |||||||||| || Sbjct 8022814 AGAGTTCGGCCATCCTCCAGCTGTTTGCCGGCAAGTATCAGATGCTGCTGGTCAGGTGGG 8022755 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||||||| || ||| ||||| | ||| | | | || | | | ||| Sbjct 8022754 ATACCCTCCTTGTCTTGAAT-TTTGGCTTTGACATCCTCATTGGTGTCACTGGGCTTGAC 8022696 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCT 34393 || | |||||||| ||||| || || || |||||||||||||||||| || Sbjct 8022695 CTCAAGAGTGATGGTCTTGCCCGTAAGGGTCTTCACAAAGATCTGCATCTCT 8022644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323033676896480