Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20nemestrina_20[refseq_20GCF_5F000956065.1_202015-03-19] 9,733 sequences; 2,948,703,511 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq37 208 7e-49 seq237 116 3e-21 seq5558 111 1e-19 seq337 98.7 9e-16 >seq37 Length=10148950 Score = 208 bits (230), Expect = 7e-49 Identities = 606/919 (66%), Gaps = 23/919 (3%) Strand=Plus/Plus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 |||| || ||| ||| | | ||| ||| ||| || ||| |||| ||| ||| Sbjct 6162987 TTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGATTCGACACCACTCCCATCC 6163046 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 | ||||| || | |||||||| |||||||| || || |||| | ||||||||| | Sbjct 6163047 TCTGATACTCCTTTACTCTCTTCTCAAAGAAGTTCGTCTTTC-----AGTGAAATATTCT 6163101 Query 16005 CCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGC---ATCCCAATTCCAACA 16061 ||||||| ||||| || || | | || | | | | || | |||| |||| || Sbjct 6163102 CCATAAAGTCAAATGGGTTCTCT--ACTCT-GAAAACCTTGCTAAAACCCAGTTCCGGCA 6163158 Query 16062 ATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTA 16121 ||| || |||||||| || || || || ||||||| | || ||||| || || | Sbjct 6163159 TG--TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGA 6163216 Query 16122 ATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTA 16181 || ||||| | || || || | || | | |||||| ||| || | || ||| Sbjct 6163217 GCTTCACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCATTGATAATTC 6163276 Query 16182 TATCTCTTACTACACTATTT-AACGGAGGGTTTAATAAGTGTTTAAACATTATACAAGCA 16240 | ||||||| | | || | || || || || | ||| || ||||| | |||||| Sbjct 6163277 TTTCTCTTATT-CTCTCCTCCAATGGTTTGTGTACCAGGTGATTGAACATCAGGCAAGCA 6163335 Query 16241 AAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGC 16300 |||||||| || || || || || | ||| || | || || ||||| || || || ||| Sbjct 6163336 AAATCACAGTGTAAACCCTCATCTCCACTAATAAGTTCATTGGAAAAGGTGAGGCCAGGC 6163395 Query 16301 ATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCT 16360 || ||||||||||| || | ||| ||||| | ||||| ||||||||||| || ||| Sbjct 6163396 ATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAG---ATGCCT 6163452 Query 16361 TCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGT-TCTAtttttactttctatcca 16419 || |||| ||||| | || | || || || || || || ||| | | ||||| Sbjct 6163453 TCCGCTGCAGCAAAGACTACAACACGTTCCCCATAGGTAGCTGCTTTGTC-CCCAATCCA 6163511 Query 16420 ttttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATAA 16479 | ||||||| ||| || | || ||||| ||| | || || ||||| || Sbjct 6163512 GTGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGCG 6163571 Query 16480 ATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGA 16539 | | | |||||||| |||| || ||||| || || || |||||||||||| | || Sbjct 6163572 AAATTCCCTTTCTTTGGGATCTTTTATGTAAGTGTCAATAAGGAAACTATACATTCCAGA 6163631 Query 16540 ATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTAC 16599 ||| || || ||||| || || || || ||| | || || | ||||| | | || || Sbjct 6163632 ATGTATGTTTTCCATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCACCTGAAC 6163691 Query 16600 TTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAA 16659 ||| | | | | || | |||||| | || ||||| ||||| || || ||||| || Sbjct 6163692 TTCTTGGCTACATCGCTCCACCAAGTTTGCATTTACTATGCCATCACTTGC-GCAAAGAA 6163750 Query 16660 CGCAAGTATGTGTTTAATAAAAtttttttCGT-TATCTGAAAGTTTTAACCAGTCAGAAA 16718 | || | || ||||||| | | || | || | | || ||||| ||| Sbjct 6163751 AACCAGAACATGGGATATAAAATATCTCTCCTCGGGCTTCAGGAATT-CCCAGTGCCAAA 6163809 Query 16719 AATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATACA 16778 || || || || ||||| || | ||||| || ||||| | ||||| ||||||| Sbjct 6163810 TGTCCTTGGACGGGTCCACCTCCTCGGCGGTCCAGAAGGAAGCTTCCGCCTTCTTATACA 6163869 Query 16779 TTTTCCATATGTCTTCGTA 16797 | | ||| || || | ||| Sbjct 6163870 TCTGCCAGATATCATGGTA 6163888 >seq237 Length=7777549 Score = 116 bits (128), Expect = 3e-21 Identities = 300/455 (66%), Gaps = 3/455 (1%) Strand=Plus/Plus Query 16235 CAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGA 16294 |||||||| | ||| || || || || || || || || | || || |||||||| || Sbjct 5488340 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 5488399 Query 16295 CCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAAT 16354 || ||||| |||||| |||| || | ||| ||||| ||||| |||||||||||||| Sbjct 5488400 CCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGAAG 5488459 Query 16355 ATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttct 16414 | | ||| ||| |||||| || | | || || || | || | ||| | | Sbjct 5488460 GTGCTTTCCACTAGGGCAAAGGCTGCAACACGTTCTCCATGGGTAACGTCTTTGTTCCCA 5488519 Query 16415 atccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTA 16474 ||||| ||||| ||| || | || |||||| ||||| | || ||||| Sbjct 5488520 ATCCAACACAAGACCCAAACTGCCTTCTTCTTGACACAGGCATTGTTC-CAATGGCATTG 5488578 Query 16475 AATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATT 16534 || | | | | |||||||| ||||| ||| | || || || || | ||||| || Sbjct 5488579 AAGAGAAATTCCCTTTCTTTGTTATCTTTAATGT--GTGTCAATAAGGAGACTATTTATG 5488636 Query 16535 TCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATT 16594 || ||||| || || || | || || || || ||||| ||||| | ||| | || Sbjct 5488637 TCAGAATGTATGTTTTCTGTAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCTGTAATC 5488696 Query 16595 TGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCA 16654 || | ||| ||| ||| | |||||||| | ||||| ||||| | |||||| Sbjct 5488697 TGAATTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTACTATCCCATCACATGCTGCA 5488756 Query 16655 AAAAACGCAAGTATGTGTTTAATAAAAtttttttC 16689 || || || || || | ||||||| | |||| Sbjct 5488757 AAGAAAGCCAGAATATAGGATATAAAATATCTTTC 5488791 >seq5558 Length=22633747 Score = 111 bits (122), Expect = 1e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 |||||||||| ||| | | || || |||||| | | | || |||||||| | Sbjct 15364121 TTTAAAAATCTGCATCCAAGGTGAAGACGTTATCTGTGGTTTCTGCCATAACTGCAAAAC 15364062 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 ||||| || ||||| || |||||||||||||||||||||||||| ||||| |||| Sbjct 15364061 GCTGATACTCCGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGTTTT 15364002 Query 16005 CCATAAAATCAAAAGGATTTTTTG 16028 ||||||||||||||||||||| || Sbjct 15364001 CCATAAAATCAAAAGGATTTTCTG 15363978 >seq337 Length=12475526 Score = 98.7 bits (108), Expect = 9e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || || || || | || || |||||||| || || ||||| ||||||||||| || Sbjct 7490259 TCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 7490318 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | ||| ||||| | ||||| ||||| |||||||| || ||||| ||||| ||||| || Sbjct 7490319 AGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 7490378 Query 16379 ACCAATCGCTCACC 16392 || | || ||||| Sbjct 7490379 ACGACACGTTCACC 7490392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462455729633800