Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20nemestrina_20[refseq_20GCF_5F000956065.1_202015-03-19] 9,733 sequences; 2,948,703,511 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq2 1546 0.0 seq1558 131 1e-25 >seq2 Length=40200012 Score = 1546 bits (1714), Expect = 0.0 Identities = 1367/1697 (81%), Gaps = 51/1697 (3%) Strand=Plus/Minus Query 107097 AGCTGGTTTGCAGCATCAGGTTACAGATGTCCATCCACAA------------GGGTCT-T 107143 |||| ||||| || ||||||||||||| |||||| || | |||| | | Sbjct 13980346 AGCTAGTTTGTAGGGTCAGGTTACAGATCTCCATCAACGAACCAGATGTAAGGGGTTTCT 13980287 Query 107144 AGGCAGGACTTGACTGAGGATATTTGTCTATAGAAGACATCTATCTTTACCATCACTCTG 107203 ||||||| ||| ||| |||||| ||||| | |||| | | | ||| |||||| | || Sbjct 13980286 AGGCAGGTCTTTACTAAGGATACTTGTCCAGGTAAGAACTATTT-TTTGCCATCAGTTTG 13980228 Query 107204 GAGTTGAACTTGATGTT-CTGG-----ATTAGTTTGTAATTAAAGGCATTTTGTTCTGTC 107257 || |||||||||||||| |||| || ||||||||| | || |||||||||||||| Sbjct 13980227 GAATTGAACTTGATGTTTCTGGGAATGATGAGTTTGTAACTGGAGTCATTTTGTTCTGTC 13980168 Query 107258 CAAGGATC---TCCTCCTCCACCTTGCCTGTGCCCAAACTCT-CCTGATCTCCCATCCCA 107313 ||||||| |||||||| |||| |||||| ||| ||| |||| ||| || | || Sbjct 13980167 CAAGGATTGTGTCCTCCTCTTCCTTCCCTGTGGTCAATCTCCACCTG-TCTACCCTTCCG 13980109 Query 107314 TGAAGATGGCTGGGTGGAAGAAGAAGCTTTGCCGGGGACATCATCTGTGGGCCCTGGGCT 107373 ||| |||| | ||||||| || || |||||| ||| | ||||||||||||||| Sbjct 13980108 TGACAATGGTTCAATGGAAGA-GA--CTCTGCCGGCAGCATTACTTGTGGGCCCTGGGCT 13980052 Query 107374 GCTATATGCTGCTGGCCGTTGTTTCTCTGAGACTTTCCCTCAGGTTTAAATGTGATGTAG 107433 ||||||||||||||||| |||| |||||| |||||| | ||||| || ||||| | Sbjct 13980051 GCTATATGCTGCTGGCCATTGTGGCTCTGAAACTTTCTTTAAGGTTGAAGTGTGACTCTG 13979992 Query 107434 ATTCCTTGGATCTGGAGTCCAGGGACTTCCAGAGTCAGCACTGTAGGGACATGTTGTACA 107493 | ||||| ||||||||||||||| || || || ||| |||||||| | || ||||| | Sbjct 13979991 ACCACTTGGGTCTGGAGTCCAGGGAATTTCAAAGCCAGTACTGTAGGAATATCTTGTATA 13979932 Query 107494 ATAGCCTGAAGCTGCCAGCAAAGAGATCCATCAACTGTTCTGGGATCACGCGAGGGGACC 107553 || |||||| |||||||||||||| || ||||||||||| |||||||| |||||||||| Sbjct 13979931 ATTCCCTGAAACTGCCAGCAAAGAGGTCTATCAACTGTTCAGGGATCACCCGAGGGGACC 13979872 Query 107554 AGGAAGCAGTGGTCCAGGCCCTCCTAGACAACCTGGAAGTGAAGAAAAAGCGGTCGCCTC 107613 ||||| ||| | ||||| | || | |||||||| || ||||| |||||| |||| Sbjct 13979871 CAGAAGCCGTGTTTCAGGCTATTCTGAATAACCTGGAGGTCAAGAAGAAGCGGGAGCCTT 13979812 Query 107614 TCACTGGCACCTATTACCTCAACATAACCAGAGACTGTGAGCGCTTCAAGGCCCAAAGGA 107673 | || | |||| | || ||| | | |||||||||||||| ||||||||||| |||||| Sbjct 13979811 TTACAGACACCCACTATCTCTCCCTCACCAGAGACTGTGAACGCTTCAAGGCGGAAAGGA 13979752 Query 107674 AGTTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGG 107733 |||||||||||||||||||||| ||||||||| | || ||||| ||||| |||||||||| Sbjct 13979751 AGTTCATACAGTTCCCACTGAGCAAAGAAGAGGTGGAGTTCCCTATTGCGTACTCGATGG 13979692 Query 107734 TGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGA 107793 || | |||||||||||||||||||||||| |||| |||||||| |||||||||||||||| Sbjct 13979691 TGATTCATGAGAAGATTGAAAACTTTGAAAGGCTACTGCGAGCTGTGTATGCCCCTCAGA 13979632 Query 107794 ACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGG 107853 |||||||||| |||||||||||| |||||||||||| |||||||||||||| ||||| | Sbjct 13979631 ACATATACTGCATCCACGTGGATGAGAAGTCCCCAGAAACTTTCAAAGAGGCAGTCAAAG 13979572 Query 107854 CCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATG 107913 | |||||||| |||||||| ||||||||||| ||||||||| |||| | |||| |||| | Sbjct 13979571 CAATTATTTCATGCTTCCCAAATGTCTTCATAGCCAGTAAGCTGGTTCGGGTGATTTACG 13979512 Query 107914 CCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAG 107973 ||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct 13979511 CCTCCTGGTCCAGGGTGCAAGCTGACCTCAACTGCATGGAAGACTTGCTCCAGAGCTCAG 13979452 Query 107974 TGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCG 108033 |||||||||| ||||| ||||||||||||||||| ||||| || |||||| |||||||| Sbjct 13979451 TGCCATGGAAATACTTCCTGAATACATGCGGGACGGACTTTCCTCTAAAGAGCAATGCCG 13979392 Query 108034 AGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTT 108093 ||||||||| ||| |||||||||||||| || | ||| || |||||| | ||||||||| Sbjct 13979391 AGATGGTCCAGGCTCTCAAGATGTTGAATGGGAGGAATAGCATGGAGACAGAGGTACCTC 13979332 Query 108094 CTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAG---GTGACAGACACACTGTACC 108150 | || |||| || |||||| |||| | || |||| ||| |||||| | ||| Sbjct 13979331 CCAAGCACAAACAATCCCGCTGGGAATATCACTTTGAGGTAGTGGGGGACACATTACACC 13979272 Query 108151 CTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCT 108210 |||| ||||| |||||| ||||||||| |||||||| | ||||| ||||||||||| | Sbjct 13979271 TAACCAACAAGAAGAAGGATCCTCCCCCTTATAATTTAACTATGTTTACAGGGAATGCGT 13979212 Query 108211 ATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGAC 108270 || ||||||| || |||| |||||||||||||| || | ||||||||||||||| || Sbjct 13979211 ATATTGTGGCTTCCCGAGATTTTGTCCAACATGTTTTGAAGAACCCTAAATCCCAACAAC 13979152 Query 108271 TGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGC 108330 || |||||||||| ||||||||||||||||| || ||||||||||||||||||||||||| Sbjct 13979151 TGATTGAATGGGTAAAAGACACCTATAGCCCTGATGAACACCTCTGGGCCACCCTTCAGC 13979092 Query 108331 GTGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGA 108390 |||| | ||||||||||||||||||||| | |||||||||||| ||||||||||||||| Sbjct 13979091 GTGCACGGTGGATGCCTGGCTCTGTTCCCAACCACCCCAAGTACGACATCTCAGACATGA 13979032 Query 108391 CTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGC 108450 || | || |||||||| |||||||||||| | || |||||||| || | ||| || | Sbjct 13979031 CTTCTATTGCCAGGCTGGTCAAGTGGCAGGATCATGAGGGAGACATCGATAAGGGTGCTC 13978972 Query 108451 CTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACC 108510 ||||||| || |||||||||||||| | | |||| |||| |||| ||||| |||||| Sbjct 13978971 CTTATGCCCCTTGCTCTGGAATCCACCAGCGGGCTGTCTGTGTTTATGGGGCTGGGGACT 13978912 Query 108511 TGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATG 108570 || ||||||| || || ||||||||||| ||||| |||||||||||||| | ||| |||| Sbjct 13978911 TGCACTGGATGCTTCAAAACCATCACCTGTTGGCCAACAAGTTTGACCCAAAGGTAGATG 13978852 Query 108571 ATAACGTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGGCCATCTATGGGACTGAAC 108630 |||| | || |||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 13978851 ATAATGCTCTTCAGTGCTTAGAAGAGTACCTACGTTATAAGGCCATCTATGGGACTGAAC 13978792 Query 108631 TTTGAG-----CT------GCA-------CTGT-GGGCCAGGGACTGTGCCAACATGCCC 108671 |||||| || ||| |||| |||| || | ||| | ||||||| | Sbjct 13978791 TTTGAGACACACTATGGGAGCATTGCTACCTGTGGGGCAAGAGCATGTACAAACATGCTC 13978732 Query 108672 AGGGCGTACTGGTACTGTGTGGGGTGGGGGACGAGGGCTGTGGAATCCATGGCATCCCCC 108731 || | | |||| || ||| ||||||| ||| |||||| || ||| | ||||||||| Sbjct 13978731 AGAACTTGCTGGGACAGTG-CGGGTGGGAGACCAGGGCTTTGCAATTCGTGGCATCCCTT 13978673 Query 108732 AGGGTCAGAGGGCTGCT 108748 ||| | || || ||||| Sbjct 13978672 AGGATAAGGGGTCTGCT 13978656 >seq1558 Length=28977278 Score = 131 bits (144), Expect = 1e-25 Identities = 574/897 (64%), Gaps = 51/897 (6%) Strand=Plus/Plus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || |||||||||||| ||| || || || || || || || ||||| ||| | ||| Sbjct 7035514 CCCCTTAGTAAAGAAGAGGCAGAGTTTCCAATAGCATATTCTATAGTGGTTCATCACAAG 7035573 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||||| |||| |||||||| | ||| | ||| |||||||| | || || | Sbjct 7035574 ATTGAAATGCTTGACAGGCTGCTGAGGGCCATCTATATGCCTCAGAATTTCTATTGCATT 7035633 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAA---AGAGGCGGTCAAGGCCATTATTTCC 107864 || ||||| || ||| ||| || | | || || || | || ||| |||| Sbjct 7035634 CATGTGGACACAAAATCC---GAGGATTCCTATTTAGCTGCAGTGATGGGCATCGCTTCC 7035690 Query 107865 TGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCC 107924 || ||| |||||||| ||||||| |||| ||||||||||| || ||| Sbjct 7035691 TGTTTCAGTAATGTCTTTGTGGCCAGCCGATTGGAGAGTGTGGTTTATGCATCATGGAGT 7035750 Query 107925 AGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCA-GAGCTCAGTGCCA--TGG 107981 | || || |||||||| ||||| ||| | ||| ||| | | | ||||| | ||| Sbjct 7035751 CGGGTTCAGGCTGACCTCAACTGCATGAAGGAC---CTCTATGCAATGAGTGCAAACTGG 7035807 Query 107982 AAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTC 108041 |||||||| | ||| || || | || || || ||||| ||||| || || ||| Sbjct 7035808 AAGTACTTGATAAATCTTTGTGGTATGGATTTTCCTATAAAAACCAACCTAGAAATTGTC 7035867 Query 108042 CTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGA---GGTACCTTCTGAG 108098 | |||||| |||| | ||| | ||||| |||| | || | | || || | Sbjct 7035868 AGGAAGCTCAAGTTGTTAATGGGAGAAAACAGCCTGGAAACGGAGAGGATGCCATCCCA- 7035926 Query 108099 TCCaaaaaaaaTCGCTGGAAATACCGCTATGAGG---------------TGACAGACACA 108143 ||| || | | |||||| | || ||||||| ||||| ||||| Sbjct 7035927 --TAAAGAAGAAAGGTGGAAAAAGCGGTATGAGGTCGTTAATGGAAAGCTGACAAACACA 7035984 Query 108144 CTGTACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGG 108203 | || ||| || | ||||| | || | ||| | || | || Sbjct 7035985 GGG------ACTGTCAAAAT---GCTTCCTCCGCTCGAAA---CACCTCTTTTTTCTGGC 7036032 Query 108204 AATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAA-ATC 108262 | |||||| ||||||| | | | | | ||| |||| || | || || ||| Sbjct 7036033 AGTGCCTACTTTGTGGTCAGTAGGGAGTATGTGGGGTATGTACTACAGAATGAAAACATC 7036092 Query 108263 CCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCAC 108322 | ||| | | || |||| ||||||| || ||||| || || | ||||||||||| Sbjct 7036093 CAGAAG-TTTATGGAGTGGGCGCAAGACACATACAGCCCTGATGAGTATCTCTGGGCCAC 7036151 Query 108323 CCTTCAGCGTGCTCCGTGGA-TGCCTGGCTCTGTTCCTAGCCA-CCCCAAGTATCACATC 108380 | | ||| | | | | || | | || ||||| || || |||| || ||||| | | Sbjct 7036152 CATCCAGAG-GATTCCTGAAGTCCCGGGCTCACTTTCT-GCCAGCCATAAGTACGATTTG 7036209 Query 108381 TCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGC 108440 || |||||| || | |||||| | ||||||||||| ||| ||||| ||||| | Sbjct 7036210 TCTGACATGCAAGCAGTTGCCAGGTTTGTCAAGTGGCAATACTTTGAGGGTGATGTTTCC 7036269 Query 108441 ATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGG 108500 | ||| || || || | |||||| |||| |||| | | | | ||||||| || Sbjct 7036270 AAGGGTGCCCCCTACCCTCCCTGCGATGGAGTCCACGTGCGCTCGGTGTGCATTTTTGGA 7036329 Query 108501 GCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 || || ||| || ||||||| || | || || ||| | || || || ||||||||| Sbjct 7036330 GCTGGTGACTTGAACTGGATGCTGCGCAAACACCACTTGTTTGCCAATAAGTTTGAC 7036386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348227488028442