Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20nemestrina_20[refseq_20GCF_5F000956065.1_202015-03-19] 9,733 sequences; 2,948,703,511 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq7002 129 5e-25 seq3 116 3e-21 seq7446 113 4e-20 seq5557 96.9 3e-15 seq758 93.3 3e-14 seq1299 91.5 1e-13 seq547 91.5 1e-13 >seq7002 Length=12659153 Score = 129 bits (142), Expect = 5e-25 Identities = 168/231 (73%), Gaps = 1/231 (0%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||||| || | || |||| |||||| ||| ||| ||||| ||||||||||| Sbjct 9467040 GCCACCTCGCAGGCGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGA 9467099 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || ||| | || ||||| ||||| ||||| ||||||| ||||| ||||| || || Sbjct 9467100 GAGAGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGG 9467159 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | |||||||||||| || |||| |||| | || | |||| | ||| || Sbjct 9467160 GATACCCTCCTTGTCTTGAA-TTTTGGCTTTGACATTCTCATGGTGTCACTGGGCTCGAC 9467218 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 || | ||| || || |||||||| || |||||||||||||| |||||||| Sbjct 9467219 CTTGAGGGTGATGGTTTTGCCCGTGAGGGTCTTCACAAAGATCTGCATGTT 9467269 >seq3 Length=16319837 Score = 116 bits (128), Expect = 3e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 |||||| ||| ||| ||||| ||||||||||| ||| ||| | || ||||| || Sbjct 4626395 GTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTG 4626336 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 |||||||| || |||| || ||| ||||||||||| | || ||||| || || || Sbjct 4626335 CTTTCCGGCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTTATCTTGGATCTT 4626276 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 | ||| || | | | | |||| | ||| ||||| | ||| || |||||||| || Sbjct 4626275 TGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGT 4626216 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 ||| |||||||| ||||| ||||| Sbjct 4626215 CAGGGTCTTCACGAAGATCTGCAT 4626192 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || || ||||| | | ||||||||||| ||| ||| ||||| ||||||||||| | Sbjct 4628627 CCCCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 4628568 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || ||||| ||||| || || || ||||||| ||| ||||| ||||| Sbjct 4628567 AGGGTGCGTCCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGG 4628508 Query 45230 ACACCCTCCTTGTCC 45244 | || ||||||||| Sbjct 4628507 ATGCCTTCCTTGTCC 4628493 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||||| || | | |||| |||||| ||| ||| ||||| ||||| ||||| Sbjct 14926626 GCCACCTCACAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTCTAGTCTGA 14926567 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || ||| | || ||| | ||||| || || ||||||| | ||| ||||| || | Sbjct 14926566 GAGACTGCGGCCATCCTCCGGCTGTTTGCCCGCAAATATCAGACACTGCTGGTCAGGCAG 14926507 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | |||| |||||| |||| || || | | | |||||| |||||| Sbjct 14926506 GATGCCCTACTTGTCTTGGATTTCGGCTTTGACATTCTCAGTGGTGTCCCTGGGCTCCAC 14926447 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||| | ||| || ||||||||| | || || ||||||||||| ||||| Sbjct 14926446 CTCAAGGGTGATGGTCTTGCCCATGAGGGTGTTCACAAAGATCTGCAT 14926399 >seq7446 Length=17224310 Score = 113 bits (124), Expect = 4e-20 Identities = 164/231 (71%), Gaps = 3/231 (1%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||||| || | || |||| |||||| ||| ||| | | ||||||||||| Sbjct 13346886 GCCACCTCGCAGGCGCAACACCAGGTGCAGGGTGGACTCTT---GGATGTTGTAGTCTGA 13346942 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || ||| | || ||||| ||||| | ||| ||||||| ||||| ||||| || || Sbjct 13346943 GAGAGTGCGGCCATCTTCCAGCTGTTTGCTGGCAAATATCAGACGCTGCTGGTCAGGTGG 13347002 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | |||||||||||| |||||| || || | | | | |||| | ||| || Sbjct 13347003 GATACCCTCCTTGTCTTGAATTTTGGCTTTGACGTTCTCAATGGTGTCACTGGGCTCGAC 13347062 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 ||| | ||| || || ||||||| || |||||||||||||| |||||||| Sbjct 13347063 CTCAAGGGTGATGGTTTTGCCCGGGAGGGTCTTCACAAAGATCTGCATGTT 13347113 >seq5557 Length=63123227 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 45129 CCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 ||| |||||| || ||| ||||| |||||| |||| || ||| | || |||| Sbjct 51838185 CCAGGTGCAGGATGGACTCTTTCTGGATGTTGCAGTCTGAGAGAGTGCGGCCATCCTCCA 51838244 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 | ||||| || || ||||||| ||||| ||||| | || | ||||||||| | || Sbjct 51838245 GCTGTTTGCCCGCAAATATCAGACGCTGCTGGTCAAGTGGGATGCCCTCCTTGGCTTGAA 51838304 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 |||| ||| || | | | |||| | ||| ||||| | ||| || ||||||| Sbjct 51838305 TTTTGGCCTTGACATTCTCAGTGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGC 51838364 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCAT 45336 | || || |||||||||||||| ||||| Sbjct 51838365 CTGTGAGGGTCTTCACAAAGATCTGCAT 51838392 >seq758 Length=2790677 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||| ||||| ||||||||||| || ||| | || ||||| || || || || || Sbjct 2565179 CTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAA 2565120 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 || | || ||| |||||||| || | || ||||| ||| ||||| ||| || Sbjct 2565119 GATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTATCCTGGATTTTGGCCTTCACATT 2565060 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | |||| | ||||||||| | ||| || |||||||| ||||| |||||||| Sbjct 2565059 TTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 2565000 Query 45325 AAAGATTTGCATGTTG 45340 ||||| ||||| ||| Sbjct 2564999 GAAGATCTGCATTTTG 2564984 Score = 87.8 bits (96), Expect = 1e-12 Identities = 157/228 (69%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| |||| | | |||| |||||| || ||||||||| ||||||||||| Sbjct 2565671 GCCACCCCTCAGGCGCAGGACCAGGTGCAGGGTTGACTCCTTCTGGATGTTGTAGTCAGA 2565612 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || ||| | || ||||| || || || || || || | || ||| |||||||| || Sbjct 2565611 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGG 2565552 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | || || || ||| || || ||| || | | | |||| | ||||| Sbjct 2565551 GATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCA- 2565493 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||| ||| || |||||||| ||||| || ||||| ||||| ||||| Sbjct 2565492 CTCCAGGGTGATGGTCTTGCCGGTCAGGGTTTTCACGAAGATCTGCAT 2565445 >seq1299 Length=15376 Score = 91.5 bits (100), Expect = 1e-13 Identities = 147/210 (70%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| || || ||| ||| ||||| ||||||||| | || ||| | || ||| Sbjct 1934 ACCAGGTTTAGGGTGGACTCTTTCTGGATGTTGTAGCCTGAGAGAGTGCGGCCATCCTCC 1875 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACA-CCCTCCTTGTCCGC 45246 || ||||| || || | ||||| ||||| ||||| || || | | ||||||||||| Sbjct 1874 AGCTGTTTCCCAGCAAGTATCAGACGCTGCTGGTCAGGTGGGATATCCCTCCTTGTCTTG 1815 Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 |||||| || || | | | |||| | ||| | ||| | ||| || ||||| Sbjct 1814 AATTTTGGCTTTGACATTCTAAATGGTGTCACTGGGCTCAATCTCAAGGGTGATGGTCTT 1755 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||||| || |||||||||||||| ||||| Sbjct 1754 GCCCGTGAGGGTCTTCACAAAGATCTGCAT 1725 >seq547 Length=9034655 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||||| || | | |||| |||||| ||| ||| | | |||| |||||| Sbjct 8022875 GCCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTCCCAGATGTCGTAGTCTGA 8022816 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || || | || ||||| ||||| ||||| | ||||| |||| ||||| || || Sbjct 8022815 GAGAGTTCGGCCATCCTCCAGCTGTTTGCCGGCAAGTATCAGATGCTGCTGGTCAGGTGG 8022756 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | |||||||||||| |||||| || || || | | |||| | || || Sbjct 8022755 GATACCCTCCTTGTCTTGAATTTTGGCTTTGACATCCTCATTGGTGTCACTGGGCTTGAC 8022696 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||| | || || ||||||||||| || |||||||||||||| ||||| Sbjct 8022695 CTCAAGAGTGATGGTCTTGCCCGTAAGGGTCTTCACAAAGATCTGCAT 8022648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395028335809393