Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20nemestrina_20[refseq_20GCF_5F000956065.1_202015-03-19] 9,733 sequences; 2,948,703,511 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq758 96.9 3e-15 seq3 91.5 1e-13 seq1670 82.4 6e-11 >seq758 Length=2790677 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 18126 AGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTG 18185 || || || ||||| || ||||||||||| | | || | |||||||| || ||| Sbjct 2565187 AGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTG 2565128 Query 18186 CCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGC 18245 || ||| |||| || || || || || ||| | |||||||||||| |||| | Sbjct 2565127 CCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTATCCTGGATTTTGGCC 2565068 Query 18246 TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAAT 18305 || || | | | | ||||||| |||||| |||| ||||||| | |||||||||| Sbjct 2565067 TTCACATTTTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTTGCCGGTCAGG 2565008 Query 18306 GTTTTTACAAAAATTTGCATTTT 18328 || || || || || |||||||| Sbjct 2565007 GTCTTCACGAAGATCTGCATTTT 2564985 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/212 (69%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || ||||| || || || ||||||||||| | | || | |||| Sbjct 2565655 AGGACCAGGTGCAGGGTTGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCT 2565596 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || ||||| ||| |||| || || || || || ||| | |||||| ||||| Sbjct 2565595 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCTTCTTTATCC 2565536 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | ||| || | | | | ||||||| |||||| || | ||||||| | Sbjct 2565535 TGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTC-CACTCCAGGGTGATGGTC 2565477 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||||||||| ||||| || || || ||||| Sbjct 2565476 TTGCCGGTCAGGGTTTTCACGAAGATCTGCAT 2565445 >seq3 Length=16319837 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 18117 ACCAT--GTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTT 18174 ||||| ||| || || || ||||| || ||||||||||| | || || | ||||| Sbjct 4626402 ACCATAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTT 4626343 Query 18175 CCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGG 18234 ||| || || || ||| |||| || || || || || || | |||||||||||| Sbjct 4626342 CCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTTATCTT 4626283 Query 18235 CAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTT 18294 || | | |||||| | ||| ||||||| |||||| |||| ||||||| | | Sbjct 4626282 GGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCT 4626223 Query 18295 TGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 |||| |||| || || || || || |||||| Sbjct 4626222 TGCCAGTCAGGGTCTTCACGAAGATCTGCATT 4626191 >seq1670 Length=4706099 Score = 82.4 bits (90), Expect = 6e-11 Identities = 167/247 (68%), Gaps = 2/247 (1%) Strand=Plus/Minus Query 18086 TTCTTTTTGTTATC--CTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGA 18143 ||| |||| ||| | | || || ||||| | || | ||||| || || || |||||| Sbjct 2974265 TTCCTTTTCTTAGCACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA 2974206 Query 18144 ATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTT 18203 || |||||||| | || || | |||||||| || ||||| ||| |||| |||||| Sbjct 2974205 ATATTGTAGTCAGACAAAGTACGTCCATCTTCCAGGTGCTTGCCAGCAAAGATCAGTCTT 2974146 Query 18204 TGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTG 18263 || ||||| || | ||||||||||| || | ||| || | | | | || Sbjct 2974145 TGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTA 2974086 Query 18264 TCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGC 18323 || ||| || || | ||||||| | || || || | ||||| || ||||| ||| Sbjct 2974085 TCCGAGGGTTCAACCTCGAGGGTGATGGTCTTCCCCGTGAGGGTTTTCACGAAAATCTGC 2974026 Query 18324 ATTTTTA 18330 | ||||| Sbjct 2974025 ACTTTTA 2974019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379299001859085