Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20nemestrina_20[refseq_20GCF_5F000956065.1_202015-03-19] 9,733 sequences; 2,948,703,511 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq37 141 8e-29 seq3224 107 2e-18 seq7002 98.7 9e-16 seq1670 93.3 4e-14 seq758 93.3 4e-14 seq7446 91.5 1e-13 seq1226 87.8 2e-12 seq9446 82.4 7e-11 >seq37 Length=10148950 Score = 141 bits (156), Expect = 8e-29 Identities = 426/654 (65%), Gaps = 18/654 (3%) Strand=Plus/Minus Query 57507 GATGAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCA 57566 ||||| || || || ||| || ||| | | |||||||| || || || || || | Sbjct 6163942 GATGAGCCGCTGCTGAGAGAAAACCCCTGCCGTTTTGTCATCTTCCCCATCGAGTACCAT 6163883 Query 57567 GACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGAC 57626 || || ||| | ||||| || ||||| ||||| || || ||||||| ||| || || ||| Sbjct 6163882 GATATCTGGCAGATGTATAAGAAGGCGGAAGCTTCCTTCTGGACCGCCGAGGAGGTGGAC 6163823 Query 57627 CTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 | ||| ||||| | | | ||||| | ||| || |||||| ||||||| Sbjct 6163822 CCGTCCAAGGACATTTGGCACTGGGAATTCCTGAAGCCCGAGGAGAGATATTTTATATCC 6163763 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 || || ||| || || || ||| ||||| || || || | || ||||| || || Sbjct 6163762 CATGTTCTGGTTTTCTTTGC-GCAAGTGATGGCATAGTAAATGCAAACTTGGTGGAGCGA 6163704 Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806 | | |||||||| || ||||| || || | || || | || || ||| | ||||| Sbjct 6163703 TGTAGCCAAGAAGTTCAGGTGACAGAAGCCCGCTGTTTCTGTGGCTTCCAAATTGCCATG 6163644 Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGAC 57866 |||||| | ||||| | ||||||| | || || || || ||| | || || | | Sbjct 6163643 GAAAACATACATTCTGGAATGTATAGTTTCCTTATTGACACTTACATAAAAGATCCCAA- 6163585 Query 57867 GAGAAACGTAGACTG--TTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAG 57924 ||||| | | | ||||| || || ||||| ||||| || |||||||||| Sbjct 6163584 -AGAAAGGGAATTTCGCTTCAATGCCATTGAAACGATGCCTTGTGTCAAGAAGAAGGCAG 6163526 Query 57925 AGTGGTCAATCAAATGGAT-----AAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAAT 57979 | ||| | | | ||||| | |||| | || || | | || | | | Sbjct 6163525 ATTGGGCCTTGCACTGGATTGGGGACAAAG-----CAGCTACCTATGGGGAACGTGTTGT 6163471 Query 57980 CGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGAT 58039 | || || || | ||||| | ||||||| || ||||| | ||||| ||| | Sbjct 6163470 AGTCTTTGCTGCAGCGGAAGGCA---TCTTTTCTGGTTATTTTGCATCGATATTCTGGCT 6163414 Query 58040 GAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGA 58099 |||||||| || |||||||| ||||| || ||| ||| || | || | || || Sbjct 6163413 CAAGAAACGAGGACTGATGCCTGGCCTCACCTTTTCCAATGAACTTATTAGTGGAGATGA 6163354 Query 58100 GGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACC 58153 |||| | || ||||||||| ||||| |||| | |||| | || | ||||| Sbjct 6163353 GGGTTTACACTGTGATTTTGCTTGCCTGATGTTCAATCACCTGGTACACAAACC 6163300 >seq3224 Length=21299586 Score = 107 bits (118), Expect = 2e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 ||||| |||||| |||||||| || ||||| || || || ||||| || || || || Sbjct 2316019 ACCTCATCTTTGCTGGTGTACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTT 2316078 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 |||| || ||||||||| |||||||| || ||||| ||||||||||| || || ||| Sbjct 2316079 CCCAGGTTCTGCTGGTTGCTCTTTCGATTACAGGAATCTTTGTAGAGCATATATGGGGTG 2316138 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGC 23196 || || || || ||||| ||||| || Sbjct 2316139 CCTGTTTCTGTTTGAGACTCAATGATGGC 2316167 >seq7002 Length=12659153 Score = 98.7 bits (108), Expect = 9e-16 Identities = 151/214 (71%), Gaps = 1/214 (0%) Strand=Plus/Minus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 |||||||||| || || || ||||| || || |||||||| |||||| || | || || | Sbjct 9467271 CAAACATGCAGATCTTTGTGAAGACCCTCACGGGCAAAACCATCACCCTCAAGGTCGAGC 9467212 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | |||| | || | |||||| | ||| |||||||| || | || || | Sbjct 9467211 CCAGTGACACCAT-GAGAATGTCAAAGCCAAAATTCAAGACAAGGAGGGTATCCCACCTG 9467153 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 ||||||||||||| ||||| || ||||||||| ||||||| ||| | || | Sbjct 9467152 ACCAGCAGCGTCTGATATTTGCCGGCAAACAGCTGGAAGATGGCCGCACTCTCTCAGACT 9467093 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGT 31401 | ||||| || ||||| || || || || ||||| Sbjct 9467092 ACAACATCCAGAAAGAGTCCACCCTGCACCTGGT 9467059 >seq1670 Length=4706099 Score = 93.3 bits (102), Expect = 4e-14 Identities = 153/218 (70%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 31194 TGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCG 31253 |||| |||||||| || || || || || || || |||||| |||| |||||||| || | Sbjct 2974025 TGCAGATTTTCGTGAAAACCCTCACGGGGAAGACCATCACCCTCGAGGTTGAACCCTCGG 2974084 Query 31254 ACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGC 31313 | | | |||| || || | || ||| |||||||| | || || || |||| Sbjct 2974085 ATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAGC 2974144 Query 31314 AGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAAC 31372 | | || || || |||||||| || ||||||| | | | ||| || || || || Sbjct 2974145 AAAGACTGATCTTTGCTGGCAAGCACCTGGAAGA-TGGACGTACTTTGTCTGACTACAAT 2974203 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 |||||||| || || ||||||||||| || | ||||| Sbjct 2974204 ATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACT 2974241 >seq758 Length=2790677 Score = 93.3 bits (102), Expect = 4e-14 Identities = 118/161 (73%), Gaps = 1/161 (1%) Strand=Plus/Plus Query 31187 TCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAA 31246 ||||| ||||| || ||||| ||||| ||||| ||||| || |||||| | || || || Sbjct 2564983 TCAAA-ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTTGAGGTGGAG 2565041 Query 31247 CCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCC 31306 || |||| |||||| || || | ||| ||| ||||||||| | || ||| Sbjct 2565042 CCCAGTGACACCATCGAAAATGTGAAGGCCAAAATCCAGGATAAGGAAGGCATTCCCCCC 2565101 Query 31307 GACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||||||||| | || || || || ||||| ||| ||||||| Sbjct 2565102 GACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGA 2565142 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/227 (68%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| || || ||||| ||||| || |||||| | || || || || Sbjct 2565445 ATGCAGATCTTCGTGAAAACCCTGACCGGCAAGACCATCACCCTGGA-GTGGAGCCCAGT 2565503 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||||| || || | || ||| || |||||| | || ||||||||| Sbjct 2565504 GACACCATCGAAAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCCCCCGACCAG 2565563 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || || ||||| ||| ||||||| ||| | || || ||| Sbjct 2565564 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAAC 2565623 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || || || || || || || || ||||| || | |||||||| || Sbjct 2565624 ATCCAGAAGGAGTCAACCCTGCACCTGGTCCTGCGCCTGAGGGGTGG 2565670 >seq7446 Length=17224310 Score = 91.5 bits (100), Expect = 1e-13 Identities = 116/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 |||||||||| || || || ||||| || | |||||||| |||||| | || || || | Sbjct 13347115 CAAACATGCAGATCTTTGTGAAGACCCTCCCGGGCAAAACCATCACCCTTGAGGTCGAGC 13347056 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | |||| | || | |||||| | ||| |||||||| || | || || | Sbjct 13347055 CCAGTGACACCATTGAGAACGTCAAAGCCAAAATTCAAGACAAGGAGGGTATCCCACCTG 13346996 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||||||||||||| ||||| || |||||||| ||||||| Sbjct 13346995 ACCAGCAGCGTCTGATATTTGCCAGCAAACAGCTGGAAGA 13346956 >seq1226 Length=1830524 Score = 87.8 bits (96), Expect = 2e-12 Identities = 157/228 (69%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 || ||||||| || | |||||||| || ||||| | ||| |||||| | || || | | Sbjct 1001233 CAGACATGCAGATCTCTGTAAAGACCCTCACAGGAAGAACCATCACCTTTGAGGTCCAGC 1001292 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | |||| |||| |||||| | || |||||||| ||| | || || | Sbjct 1001293 CCAGTGACACCAGTGAAAATGTCAAAGCCAAGATCCATGACAAGGAGGGCATCCCACCTG 1001352 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 ||||||||| ||| ||||| | |||||||||||||| || ||| | |||| Sbjct 1001353 ACCAGCAGCATCTGATATTTGTGGGCAAACAGTTGGAGGATGGCCACACTCTTTCAGATT 1001412 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAG-ACTGAGG 31414 ||||||| || ||||| || || || || |||| ||| | |||||| Sbjct 1001413 ATAACATCCAGAAAGAGTCCACCCTGCAGGTGGTGCTTTGCCCTGAGG 1001460 >seq9446 Length=14842378 Score = 82.4 bits (90), Expect = 7e-11 Identities = 153/222 (69%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| || || || || || || || |||||| |||| |||||||| Sbjct 8609802 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCC 8609861 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || | | | |||| || || | || ||| |||||||| | || || | Sbjct 8609862 TCGAATACGATAGAAAATGTAAAGGCCAAGATCCAGGAGAAGGAAGGAATTCCTCCTGCT 8609921 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368 | ||| | || || || |||||||| || ||||||| | | | ||| || || || Sbjct 8609922 CTGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGA-TGGACGTACTTTGTCTGACTA 8609980 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 || |||||||| || || ||||||||||| || | ||||| Sbjct 8609981 CAATATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACT 8610022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445712166945360