Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20nemestrina_20[refseq_20GCF_5F000956065.1_202015-03-19] 9,733 sequences; 2,948,703,511 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq37 340 2e-88 seq3224 114 2e-20 seq337 111 2e-19 seq9297 107 2e-18 seq4669 100 4e-16 seq9224 95.1 2e-14 seq1336 95.1 2e-14 seq170 84.2 3e-11 >seq37 Length=10148950 Score = 340 bits (376), Expect = 2e-88 Identities = 642/938 (68%), Gaps = 25/938 (3%) Strand=Plus/Plus Query 33235 TTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTT 33291 |||| |||||| |||| || | |||| ||| ||| | || |||| |||||||| Sbjct 6162987 TTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGATTCGACACCACTCCCATCC 6163046 Query 33292 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTT 33351 | || || || || | || || || || || || |||| | ||| ||||| | Sbjct 6163047 TCTGATACTCCTTTACTCTCTTCTCAAAGAAGTTCGTCTTTC-----AGTGAAATATTCT 6163101 Query 33352 CCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATCA 33411 |||| || ||||| || || || || ||| || |||| |||| ||| | || Sbjct 6163102 CCATAAAGTCAAATGGGTTCTCTACTCTGAAAACCTTGCTAAAACCCAGTTCCGGCATG- 6163160 Query 33412 ATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGTT 33471 ||| ||||| || || || || ||| ||||| | |||||||| || ||||| | Sbjct 6163161 -TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCT 6163219 Query 33472 TAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAATAA 33531 | || || | ||| |||| || ||||| ||||| || || ||||| | || | Sbjct 6163220 TCACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCATTGATAATTCTTT 6163279 Query 33532 ATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAACATGCGAAAT 33591 ||| | | || || ||| |||| | || || ||||||| || || |||| Sbjct 6163280 CTCTTATTCTCTCCTCCAATGGTTTGTGTACCAGGTGATTGAACATCAGGCAAGCAAAAT 6163339 Query 33592 CGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTA 33651 | ||||| | |||||| |||| |||||| | ||| || ||||| ||||| || ||||| | Sbjct 6163340 CACAGTGTAAACCCTCATCTCCACTAATAAGTTCATTGGAAAAGGTGAGGCCAGGCATCA 6163399 Query 33652 GGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTA 33711 | || || || || ||||| ||||| || || || | || ||||||| | ||||| Sbjct 6163400 GTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAGATG---CCTTCCG 6163456 Query 33712 CTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGTATCCACTTTT 33768 ||||||||||| | | || | || ||||| | | || |||| ||||| | Sbjct 6163457 CTGCAGCAAAGACTACAACACGTTCCCCATAGGTAGCTGCTTTGTCCCCAATCCAGTGCA 6163516 Query 33769 GAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGt 33828 |||||||| |||||||| || ||||||||||||||||| |||||||| ||| || | | Sbjct 6163517 AGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGCGAAATT 6163576 Query 33829 ttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAA 33888 |||| || |||||| | ||||| || || | | |||||||||| | ||||| | Sbjct 6163577 CCCTTTCTTTGGGATCTTTTATGTAAGTGTCAATAAGGAAACTATACATTCCAGAATGTA 6163636 Query 33889 TGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTG 33948 ||||||| ||||| || || || || ||||||| | || || || | ||| |||||| Sbjct 6163637 TGTTTTCCATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCACCTGAACTTCTT 6163696 Query 33949 TACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCA 34008 | | |||| || | || ||| |||| ||||| |||||||| || ||||| || ||| Sbjct 6163697 GGCTACATCGCTCCACCAAGTTTGCATTTACTATGCCATCACTTGC-GCAAAGAAAACCA 6163755 Query 34009 ATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTG----ATA 34064 ||||| |||||||||| | || || || | || ||||| || || || Sbjct 6163756 GAACATGGGATATAAAATATCTCTCCTCGGGCTTCAG-GAATTCC---CAGTGCCAAATG 6163811 Query 34065 TCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATA 34124 || || || ||||| || || | ||||| || || || || ||||| |||||||| Sbjct 6163812 TCCTTGGACGGGTCCACCTCCTCGGCGGTCCAGAAGGAAGCTTCCGCCTTCTTATACATC 6163871 Query 34125 TTCCAGATGTCATGATATTGGATTGGGAAAATAACAAA 34162 | |||||| ||||| || | ||| ||||| || ||||| Sbjct 6163872 TGCCAGATATCATGGTACTCGATGGGGAAGATGACAAA 6163909 >seq3224 Length=21299586 Score = 114 bits (126), Expect = 2e-20 Identities = 128/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 62113 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62172 |||| ||||| || |||||||| || |||||| ||| | || || || || ||||||| Sbjct 2303265 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATAT 2303324 Query 62173 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62232 ||| |||||| |||||||| ||||| || || || || || ||||| || | | || | Sbjct 2303325 TCAAAGATTGGCTTTGATCAATGAAAGCACCTCTCTCAGCTGCCATCTTGAGAACGGTTT 2303384 Query 62233 TTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62283 | || | |||||||| | ||||||||||| | |||| | || || |||| Sbjct 2303385 TCTGAGAGATTTCCCACACAGTTTTATAAAGTTGCTTCAGGTCATCAGGAA 2303435 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447 || || |||||||| ||||| ||||| ||||| || || || ||||| || ||||| | Sbjct 2306112 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATG 2306171 Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507 ||||||||||| |||| || |||||||| || || || ||||| || || | | |||| Sbjct 2306172 GACTCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAA 2306231 Query 62508 CTATTTCTAAGACCGTA 62524 || ||||| | ||| || Sbjct 2306232 CTGTTTCTTATACCATA 2306248 Score = 102 bits (112), Expect = 1e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 63267 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGT 63326 ||||||||||| |||||||| |||||||||||||| | || |||||||| | | || Sbjct 2317668 ACTCGTTTCATGAAGAGATCCGGAATCCAAAGAGCAAAGAAAAGATCTCTGGCACGCTGC 2317727 Query 63327 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 63386 ||||| |||||||| ||||| || | ||| ||||| | | || || ||||||| || Sbjct 2317728 TCCTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCAAGGC 2317787 Query 63387 TCCAAGTATATGGC 63400 |||| ||| || || Sbjct 2317788 TCCAGGTAAATAGC 2317801 Score = 95.1 bits (104), Expect = 2e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 62626 CATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGT 62685 |||| || || ||||| || | || || || || | ||| || || || | || || | Sbjct 2311356 CATAGGTTTCGTATGGGCCCTGCTCCTTGGCAAGGTCACAGCTGGCTTCCAGGGCGCCAT 2311415 Query 62686 AATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGAT 62745 ||||||| ||||||||||||| ||||||||| ||| ||||| | || ||||| || | Sbjct 2311416 AATAAATAGTTTCAAAGATCTGCTTATTTAGTAATTGGGCTTCTGCACTCTCAAAAGGGT 2311475 Query 62746 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62805 | | | || ||||| || || || | ||||| || ||||| || || || | ||| | Sbjct 2311476 ATCTCATCAGGATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATGAC 2311535 Query 62806 TCTTATTAGA 62815 ||||| || Sbjct 2311536 GTTTATTTGA 2311545 >seq337 Length=12475526 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| || || | ||| || ||||| ||||| || ||||| || || || || | Sbjct 7490257 CCTCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 7490316 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| ||||| || || || || |||||||||||||| ||||| ||||||||||||| Sbjct 7490317 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 7490376 Query 33724 C 33724 | Sbjct 7490377 C 7490377 Score = 100 bits (110), Expect = 4e-16 Identities = 94/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 33842 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33901 |||||| | ||||| || || | ||||||||||||||| ||||| |||||||| ||||| Sbjct 7492360 ATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGC 7492419 Query 33902 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTC 33961 || || || || |||||||| | || || |||||||| |||||| | |||||| || Sbjct 7492420 AATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 7492479 >seq9297 Length=17183 Score = 107 bits (118), Expect = 2e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 33606 TCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33665 || ||||| || || | ||| || ||||| |||||||| ||||| || || | ||| || Sbjct 1697 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCTTT 1638 Query 33666 AGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33724 ||||| ||||| | ||| || ||||| || ||||| ||||||||||| ||||||||||| Sbjct 1637 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 1579 >seq4669 Length=23083556 Score = 100 bits (110), Expect = 4e-16 Identities = 70/80 (88%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 188376 TCGGATCTATAGGCTTGATTTTCGCATTGACTTTACACAGACATAAACATCCCCTGAATC 188435 |||||||| | || |||||||| |||||||||||| |||||||||| ||||||| || | Sbjct 20949454 TCGGATCTCTGGGTTTGATTTTTGCATTGACTTTAAACAGACATAAGTATCCCCTTAACC 20949513 Query 188436 TGTACCTACTTTGTGGATTT 188455 |||||||||||| ||||||| Sbjct 20949514 TGTACCTACTTTTTGGATTT 20949533 Score = 98.7 bits (108), Expect = 1e-15 Identities = 89/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 188489 GTTACTTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTT 188548 |||||||||||||||| ||| || | ||||||||||| |||||||| |||| ||| Sbjct 20956063 GTTACTTTCTATGATGTATATATTATTCTGCAAGCTTTCATACTGACTACTACAGTATTT 20956122 Query 188549 CTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTG 188600 ||| | ||||| | |||||||||||| ||||| |||||||| ||| ||| Sbjct 20956123 TTTGGTTTGACTGTGTATACTCTACAATCTAAGAGGGATTTCAGCAAATTTG 20956174 Score = 91.5 bits (100), Expect = 2e-13 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 188172 TGCTCCTCCATCGAGGACGACTTCAACTATGACAGCTCGGTGGCGTCTGCCAGCGTGCAC 188231 |||||||| |||||||||||||||||||||| |||| ||||| || |||||||||||| Sbjct 20934227 TGCTCCTCGATCGAGGACGACTTCAACTATGGCAGCAGCGTGGCCTCCGCCAGCGTGCAC 20934286 Query 188232 ATACGAATGG 188241 || ||||||| Sbjct 20934287 ATCCGAATGG 20934296 >seq9224 Length=17174830 Score = 95.1 bits (104), Expect = 2e-14 Identities = 151/216 (70%), Gaps = 3/216 (1%) Strand=Plus/Plus Query 31338 ATCTAGAGATTGTACTTCTTCAAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGC 31397 ||| | || ||| |||||||| | |||||||||| | || |||| | || || || || Sbjct 3229329 ATCCAAAGCTTGAACTTCTTCTATTTCTGGATAAAAAATCCGTTCGCAAATGAGTTGTGC 3229388 Query 31398 TATTCTATCTCCAGTATTTACATTAAACGTACATTTTCCATTATTAATAAGAATGACTCC 31457 |||| ||| || | || || | |||| | ||| ||| ||||| || | || || Sbjct 3229389 AATTCGATCACCCTTTTTGACTTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACC 3229448 Query 31458 TATGTTTCCCCTATAATCTTCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAG 31514 | ||||| ||||||||||| | ||| ||||| |||||| |||||| | |||| Sbjct 3229449 AACATTTCCTCTATAATCTTCATTTATGACACCAGCTCCTACATCAATAAAGTGTTTTGC 3229508 Query 31515 GGACAGACCAGACCTAGGAGCTATTCTACCATAGCA 31550 | || || |||| ||||||| ||| ||||| || Sbjct 3229509 AGCCAAGCCTGACCGTGGAGCTACTCTTCCATAACA 3229544 >seq1336 Length=15368434 Score = 95.1 bits (104), Expect = 2e-14 Identities = 177/255 (69%), Gaps = 9/255 (4%) Strand=Plus/Plus Query 31299 TCCTGTTGATCCAAACCCT--TGATCTCCTCTATCTGTACTATCTAGAGATTGTACTTCT 31356 ||| || || ||||| ||| ||| | ||| | ||| ||| | || ||| |||||| Sbjct 3172634 TCCAGTAGAACCAAAACCTCCTGAACCCCTTTTGGTGTC--ATCCAAAGCTTGAACTTCT 3172691 Query 31357 TCAAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCAGTATTT 31416 || | ||||||||| | || |||| | | || ||||| || |||| ||| | ||||| Sbjct 3172692 TCTATTTCTGGATAGAACATCCGTTCACAAATGAGCTGTGCAATTCGATCACGT-TATTT 3172750 Query 31417 -ACATTAAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATC 31475 || | |||| | ||| ||| ||||| | | || || || ||||| |||||||| Sbjct 3172751 GACTTCAAACTTTTCTTTGCCAAAATTAAAGACTACAACACCAATATTTCCTCTATAATC 3172810 Query 31476 TTCGTCTATTACACCGCCTCCTATAT---CAATGCCTTTTAGGGACAGACCAGACCTAGG 31532 ||| ||| | ||||| |||||| || ||| | |||| | || ||||||| || Sbjct 3172811 TTCATCTGTGACACCAGCTCCTACATCTACAACGTGTTTTGCAGCCAAGCCAGACCGTGG 3172870 Query 31533 AGCTATTCTACCATA 31547 ||||| ||| ||||| Sbjct 3172871 AGCTACTCTTCCATA 3172885 >seq170 Length=10713981 Score = 84.2 bits (92), Expect = 3e-11 Identities = 145/209 (69%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 31299 TCCTGTTGATCCAAACCCT--TGATCTCCTCTATCTGTACTATCTAGAGATTGTACTTCT 31356 ||| || || ||||| ||| ||| | ||| | ||| ||| | || ||| |||||| Sbjct 2521879 TCCAGTGGAACCAAAACCTCCTGAACCCCTTTCCGTGTC--ATCCAAAGCTTGAACTTCT 2521822 Query 31357 TCAAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCAGTATTT 31416 || | |||||||||| | || |||| | || ||||| || |||| ||| | | || Sbjct 2521821 TCTATTTCTGGATAAAAAATCCGTTCGCAAATGAGCTGTGCAATTCGATCACACTTTTTG 2521762 Query 31417 ACATTAAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCT 31476 || | |||| | ||| ||| |||| || | | || | ||||| ||||||||| Sbjct 2521761 ACTTCAAACTTTTCTTTGCCAAAGTTAAACAGTACACCACCAACATTTCCTCTATAATCT 2521702 Query 31477 TCGTCTATTACACCGCCTCCTATATCAAT 31505 || ||||| ||||| |||||| |||||| Sbjct 2521701 TCATCTATGACACCAGCTCCTACATCAAT 2521673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629740974816240