Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20nemestrina_20[refseq_20GCF_5F000956065.1_202015-03-19] 9,733 sequences; 2,948,703,511 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq37 242 3e-59 seq237 159 3e-34 seq9297 114 1e-20 seq3224 93.3 4e-14 >seq37 Length=10148950 Score = 242 bits (268), Expect = 3e-59 Identities = 612/918 (67%), Gaps = 38/918 (4%) Strand=Plus/Plus Query 11308 ATTCTCTTCTTTATTTGTAAACACCCCCATCTTTTGATATTCACTAACTCGTCGT-TCGA 11366 ||||||| | ||| | | ||| |||||| | ||||| || | |||| || | || | Sbjct 6163015 ATTCTCTGTTGGATTCGACACCACTCCCATCCTCTGATACTCCTTTACTC-TCTTCTCAA 6163073 Query 11367 AAAAATTAGTCTTACCTTCTAGTGATATATACTCCATAAAGCTAAAAGGATTATATACAT 11426 | || || ||||| | ||||| |||| |||||||||| ||| || || | ||| Sbjct 6163074 AGAAGTTCGTCTTTC-----AGTGAAATATTCTCCATAAAGTCAAATGGGTTCTCTACTC 6163128 Query 11427 TGAAGACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATATACT 11486 |||| || || | |||| | || | | ||| ||||| || || || || || | Sbjct 6163129 TGAAAACCTTGCTAAAACCCAGTTCCGGCATG--TCTGTCTGCCACAAACTCAATGTATT 6163186 Query 11487 GAGACATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACT 11546 | ||||| | |||||||| || || || | ||| || | || | || | || | Sbjct 6163187 GCTTCATTAGAGTGCAATTCATCCCAATGAGCTTCACAGGCAAGGCCTCAGTGAGGAATT 6163246 Query 11547 CCTTTTCTATATTAACCGCATCAATGATTATCGACGTTATAACTTCCTTAGATGGTGGAT 11606 ||| |||||| ||| |||| || ||| | |||| |||| ||||| | Sbjct 6163247 CCTGTTCTATCCGAACAGCATTGATAATTCTTTCTCTTATTCTCTCCTCCAATGGTTTGT 6163306 Query 11607 GTAATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTA 11666 ||| | || || ||||| | || ||||||||||| |||||||| || |||| ||| | Sbjct 6163307 GTACCAGGTGATTGAACATCAGGCAAGCAAAATCACAGTGTAAACCCTCATCTCCACTAA 6163366 Query 11667 TTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAG 11726 | |||||||| ||||| || | || ||||||| ||||||||| || | ||| ||||| | Sbjct 6163367 TAAGTTCATTGGAAAAGGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCG 6163426 Query 11727 CAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTC 11786 ||||| ||||||||||| || || ||| | || ||||| |||| || | ||| | Sbjct 6163427 ATGCAAAATAACCAGAAAAG---ATGCCTTCCGCTGCAGCAAAGACTACAACACGTTCCC 6163483 Query 11787 CATA------TACCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTA 11840 |||| | | |||| | | ||||| | ||||||||| || ||||| || | Sbjct 6163484 CATAGGTAGCTGCTTTGTCCCCA---ATCCAGTGCAAGGCCCAATCTGCCTTCTTCTTGA 6163540 Query 11841 CGCATTCCATTGTTTCTATAGCGTTAAA--TAAATGCATTTTTTCTATATTATCTCTTAC 11898 | || ||| ||||| || || || || |||| | ||||| | |||| ||| Sbjct 6163541 CACAAGGCATCGTTTCAATGGCATTGAAGCGAAATTC--CCTTTCTTTGGGATCTTTTAT 6163598 Query 11899 ATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAA 11958 || || || || | |||||||||||| | ||||| || |||||||| || ||||| || Sbjct 6163599 GTAAGTGTCAATAAGGAAACTATACATTCCAGAATGTATGTTTTCCATGGCAATTTGGAA 6163658 Query 11959 TCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATT 12018 ||| ||||||| || || |||| ||| || || | ||| ||| | || || Sbjct 6163659 GCCACAGAAACAGCGGGCTTCTGTCACCTGAACTTCTTGGCTACATCGCTCCACCAAGTT 6163718 Query 12019 CTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTT 12078 ||||||| || |||||||| | ||||| || | || | ||| |||||| ||| | Sbjct 6163719 TGCATTTACTATGCCATCACTTG-CGCAAAGAAAACCAGAACATGGGATATAAAATATCT 6163777 Query 12079 TTC----GTCTTTAGTTAATTTATCCCAATCATCTAAA--TCTTTTGATAAATCTACTTC 12132 || | ||| || ||| ||||| | | ||| || || || || || || Sbjct 6163778 CTCCTCGGGCTTCAG-GAAT---TCCCAGT--GCCAAATGTCCTTGGACGGGTCCACCTC 6163831 Query 12133 TTCAACGGTCCAAAAACTTGCCACTGATTGTTTATACATTTTCCAGATATCATGATACTT 12192 || ||||||| || || | | | |||||||| | |||||||||||| |||| Sbjct 6163832 CTCGGCGGTCCAGAAGGAAGCTTCCGCCTTCTTATACATCTGCCAGATATCATGGTACTC 6163891 Query 12193 AATAGGGAAAATAACGAA 12210 || ||||| || || || Sbjct 6163892 GATGGGGAAGATGACAAA 6163909 >seq237 Length=7777549 Score = 159 bits (176), Expect = 3e-34 Identities = 318/463 (69%), Gaps = 16/463 (3%) Strand=Plus/Plus Query 11630 CACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAAT 11689 || ||||| | ||| |||||||| || || || || || |||||||| |||||||| | Sbjct 5488340 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 5488399 Query 11690 CCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAAT 11749 || ||||||| |||| |||| || | ||| ||||| ||||| |||||||||||||| Sbjct 5488400 CCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGAAG 5488459 Query 11750 ATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCAT--ATA----CCTTGTTGCTA 11803 | | ||||| ||||| ||| | || | |||||||| || | ||||| | | Sbjct 5488460 GTGCTTTCCACTAGGGCAAAGGCTGCAACACGTTCTCCATGGGTAACGTCTTTGTTCCCA 5488519 Query 11804 GATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCG 11863 ||||| | ||||| | || ||||| || || || ||||||| | || || Sbjct 5488520 ---ATCCAACACAAGACCCAAACTGCCTTCTTCTTGACACA-GGCATTGTTCCAATGGCA 5488575 Query 11864 TT--AAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTAT 11921 || | | |||| | ||||| | |||||| ||| || ||| || || | | ||||| Sbjct 5488576 TTGAAGAGAAATTC--CCTTTCTTTGTTATCT-TTA-ATGTGTGTCAATAAGGAGACTAT 5488631 Query 11922 ACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTG 11981 || || ||||| || ||||| |||| ||||| || |||||||| || | |||| Sbjct 5488632 TTATGTCAGAATGTATGTTTTCTGTAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCTG 5488691 Query 11982 AACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAG 12041 | ||| | || | |||| |||| | || || |||| ||| || ||||||| | Sbjct 5488692 TAATCTGAATTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTACTATCCCATCACATG 5488751 Query 12042 ATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTC 12084 |||||| || || || |||| |||||| ||| |||| || Sbjct 5488752 CTGCAAAGAAAGCCAGAATATAGGATATAAAATATCTTTCCTC 5488794 >seq9297 Length=17183 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||| ||||| || || |||||||| ||||| || | ||| ||||| | |||| || | Sbjct 1699 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCT 1640 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 ||| ||| |||||||||||||| || || || ||||| ||||| || ||||| ||||| | Sbjct 1639 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 1580 Query 11772 CTACTACTCTTTCTCC 11787 | || |||||||| || Sbjct 1579 CCACCACTCTTTCCCC 1564 >seq3224 Length=21299586 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| ||||| || || ||||| | ||||| || ||||| || || ||||||||| Sbjct 2306112 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATG 2306171 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 ||||||||||| | | || |||| || || || |||||||| || || || || | Sbjct 2306172 GACTCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAA 2306231 Query 37258 CTATTTCTCAATCCAT 37273 || ||||| | |||| Sbjct 2306232 CTGTTTCTTATACCAT 2306247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468467798101520