Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20nemestrina_20[refseq_20GCF_5F000956065.1_202015-03-19] 9,733 sequences; 2,948,703,511 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq59 143 2e-29 seq2025 95.1 1e-14 seq2991 86.0 5e-12 >seq59 Length=9163144 Score = 143 bits (158), Expect = 2e-29 Identities = 130/164 (79%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 20989 TCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACG 21048 |||||||||||| ||| || |||| ||||| || |||||||||||||||||||| || | Sbjct 409649 TCAGGCCCGTGATGTGCGCAATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAAAG 409708 Query 21049 GGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAG 21108 | || || ||||||||||| | || |||||||||||||||||||||||||| | Sbjct 409709 GCACACCTAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTTCA 409768 Query 21109 CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATC 21152 |||| || ||||| || | | | || || ||||| || |||||| Sbjct 409769 CCACATAGAACTGGCAGAGAGCATGGCATGGAGGCAGTGCCATC 409812 >seq2025 Length=336978 Score = 95.1 bits (104), Expect = 1e-14 Identities = 164/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 2982 TTCTCGCTAGAAAGTGTGCTCCGTGCGGTGGTTCACGTAATTCTCTGCTCAAAATAATAT 3041 |||| || |||||||| ||||| || || ||||| | ||||||||| | ||| | || Sbjct 122444 TTCTGGCAAGAAAGTGAGCTCCTTGTGGAGGTTCCTTGAGTTCTCTGCTGAGAATTAAAT 122385 Query 3042 TAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGAAAACCATGTTCTT-TTCCCC 3100 ||||||||| | | || || ||||| ||||| ||||| ||||| | |||| | | | Sbjct 122384 TAATTCTGTCCTTTAAAGATCGATTCTTCTCAGGAATGGAGAACCA-GATCTTCCTACAC 122326 Query 3101 ATAATAACCACATTCTTTTCACCTACAACCGATGGCGTAGACGTCATTTTCTGAAAATAC 3160 ||| |||| ||||| || |||| | || || | || |||||| |||| ||||| Sbjct 122325 GTAA-CACCAGATTCTGTTTACCTTCTACTGA-AGAGTTTGTGTCATTCTCTGGAAATAT 122268 Query 3161 ATCATTTCGTTTCTAAGGTACGGCCAAGGCATTGTTCCGTTTTTACCAATTCC 3213 | | ||| || || || |||||| |||| ||||| || ||||| || Sbjct 122267 CTAAATTCATTCCTGAGCGGCGGCCAGGGCAGGTCCCCGTTCTTGCCAATGCC 122215 >seq2991 Length=91112 Score = 86.0 bits (94), Expect = 5e-12 Identities = 191/277 (69%), Gaps = 10/277 (4%) Strand=Plus/Plus Query 2971 ATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCGGTGGTTCACGTAATTCTCTGCT 3030 |||||| || |||| || ||| | || ||||| || || ||||| | ||||||||| Sbjct 19283 ATCGTCCAGACTTCTGGCAAGAGAATGAGCTCCCTGTGGAGGTTCCTTGAGTTCTCTGCT 19342 Query 3031 CAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGAAAACCATGT 3090 | || | ||||||||| | | | || || ||||| ||||| ||||| ||||| | Sbjct 19343 GAGAACTAAATTAATTCTATCCTTTAAAGATCGATTCTTCTCAGGAATGGAGAACCA-GA 19401 Query 3091 TCTTT-TCCCCATAATAACCACATTCTTTTCACCTACAACCGATGGCGTAGACGTCATTT 3149 |||| | | | ||| | ||| ||||| || |||| | | || | | | ||||||| Sbjct 19402 TCTTCCTACACGTAACA-CCAGATTCTGTTTACCTTCTAGTGAAGAGTTTGT-GTCATTT 19459 Query 3150 TCTGAAAATACATCATTTCGTTTCTAAGGTACGGCCAAGGCATTGTTCC-GTTTTTACCA 3208 |||| |||||| | | ||| | || || |||||| |||| || || ||| || ||| Sbjct 19460 TCTGGAAATACCTAAATTCACTCCTGAGCGGCGGCCAGGGCA-GGTCCCGGTTCTTGCCA 19518 Query 3209 ATTCCTAATTGTTC--ATCAACTGCAACGATGCAGTT 3243 || || | ||||| || || ||||||||||| Sbjct 19519 ATGCCCA--TGTTCTGGGACACAGCGACGATGCAGTT 19553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427725256809840