Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20nemestrina_20[refseq_20GCF_5F000956065.1_202015-03-19] 9,733 sequences; 2,948,703,511 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq37 322 7e-83 seq237 199 6e-46 seq3224 120 4e-22 seq337 116 5e-21 seq9297 111 2e-19 seq9224 98.7 1e-15 seq1336 95.1 2e-14 seq170 89.7 7e-13 >seq37 Length=10148950 Score = 322 bits (356), Expect = 7e-83 Identities = 639/938 (68%), Gaps = 25/938 (3%) Strand=Plus/Plus Query 49613 TTTAAAAGTCAACATCTAGAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTT 49669 |||| |||||| |||| | | |||| ||| ||| | || |||| |||||||| Sbjct 6162987 TTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGATTCGACACCACTCCCATCC 6163046 Query 49670 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTT 49729 | || || || || | || || || || || || |||| | ||| ||||| | Sbjct 6163047 TCTGATACTCCTTTACTCTCTTCTCAAAGAAGTTCGTCTTTC-----AGTGAAATATTCT 6163101 Query 49730 CCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCA 49789 |||| || ||||| || || || | ||| || |||| |||| ||| | || Sbjct 6163102 CCATAAAGTCAAATGGGTTCTCTACTCTGAAAACCTTGCTAAAACCCAGTTCCGGCATG- 6163160 Query 49790 ATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTT 49849 ||| || || ||||| || || ||| ||||| | |||||||| || || || | Sbjct 6163161 -TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCT 6163219 Query 49850 TAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAG 49909 | || || | ||| |||| || ||||| ||||| || || |||| | || | Sbjct 6163220 TCACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCATTGATAATTCTTT 6163279 Query 49910 ATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAAAT 49969 ||| | | || || ||| || | | || || ||||||| || || |||| Sbjct 6163280 CTCTTATTCTCTCCTCCAATGGTTTGTGTACCAGGTGATTGAACATCAGGCAAGCAAAAT 6163339 Query 49970 CGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTA 50029 | ||||| | |||||| |||| |||||| ||||| |||||||| ||||| || ||||| | Sbjct 6163340 CACAGTGTAAACCCTCATCTCCACTAATAAGTTCATTGGAAAAGGTGAGGCCAGGCATCA 6163399 Query 50030 GGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTA 50089 | || || || || ||||| ||||| || ||||| | |||||||||| | ||||| Sbjct 6163400 GTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAGATG---CCTTCCG 6163456 Query 50090 CTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGC-GCT--GTCATGTATCCACTTTT 50146 |||| |||||| | |||| | || ||||| | || ||| ||| ||||| | Sbjct 6163457 CTGCAGCAAAGACTACAACACGTTCCCCATAGGTAGCTGCTTTGTCCCCAATCCAGTGCA 6163516 Query 50147 GAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGt 50206 |||||||| |||||||| || ||||||||||||||||| |||||||| ||| || | | Sbjct 6163517 AGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGCGAAATT 6163576 Query 50207 ttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAA 50266 |||| || |||||| | ||||| || || | | |||||||||| | ||||| | Sbjct 6163577 CCCTTTCTTTGGGATCTTTTATGTAAGTGTCAATAAGGAAACTATACATTCCAGAATGTA 6163636 Query 50267 TGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTG 50326 ||||||| ||||| || || || || ||||||| | || || || | ||| |||||| Sbjct 6163637 TGTTTTCCATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCACCTGAACTTCTT 6163696 Query 50327 TACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCA 50386 | | |||| || | || ||| |||| ||||| || ||||| || ||||| || ||| Sbjct 6163697 GGCTACATCGCTCCACCAAGTTTGCATTTACTATGCCATCACTTGC-GCAAAGAAAACCA 6163755 Query 50387 ATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTG----ATA 50442 ||||| |||||||| | | || | ||| | || ||||| || || || Sbjct 6163756 GAACATGGGATATAAAATATCTCTCCTCGGGCTTCAG-GAATTCC---CAGTGCCAAATG 6163811 Query 50443 TCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATA 50502 || || || || || || || | ||||| || || || || ||||| |||||||| Sbjct 6163812 TCCTTGGACGGGTCCACCTCCTCGGCGGTCCAGAAGGAAGCTTCCGCCTTCTTATACATC 6163871 Query 50503 TTCCAGATGTCATGATATTGGATTGGGAAAATAACAAA 50540 | |||||| ||||| || | ||| ||||| || ||||| Sbjct 6163872 TGCCAGATATCATGGTACTCGATGGGGAAGATGACAAA 6163909 >seq237 Length=7777549 Score = 199 bits (220), Expect = 6e-46 Identities = 315/445 (71%), Gaps = 10/445 (2%) Strand=Plus/Plus Query 49972 CAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGG 50031 ||||| | |||||| || || ||||| ||||| |||||||| ||||| || ||||| || Sbjct 5488352 CAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGT 5488411 Query 50032 CCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACT 50091 || | || || ||||| ||||| ||||| || |||||||||||| | | ||| ||| Sbjct 5488412 CCTTGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGAAGGTGCTTTCCACT 5488471 Query 50092 GCGGCAAAGGCAACAAGTCTCTCTCCA----TAACTGGCGCTGTCATGTATCC-ACTTTT 50146 ||||||||| ||| | |||||| |||| | | ||| |||| || Sbjct 5488472 AGGGCAAAGGCTGCAACACGTTCTCCATGGGTAAC-GTCTTTGTTCCCAATCCAACACAA 5488530 Query 50147 GAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGt 50206 || ||||| | |||||||| || |||| |||||| ||| | |||||||| |||||| | | Sbjct 5488531 GA-CCCAAACTGCCTTCTTCTTGACAC-AGGCATTGTTCCAATGGCATTGAAGAGAAATT 5488588 Query 50207 ttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAA 50266 |||| || |||||||| || || || || | ||||||| || || ||||| | Sbjct 5488589 CCCTTTCTTTGTTATCTTTA--ATGTGTGTCAATAAGGAGACTATTTATGTCAGAATGTA 5488646 Query 50267 TGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTG 50326 ||||||| | || || || || || ||||| || | || |||||||| | |||| Sbjct 5488647 TGTTTTCTGTAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCTGTAATCTGAATTTCTT 5488706 Query 50327 TACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCA 50386 | |||| |||| | || ||||||| ||||| || |||| |||||||| || |||| Sbjct 5488707 GAACAAATTGTTCCACCAAGTTTTCATCTACTATCCCATCACATGCTGCAAAGAAAGCCA 5488766 Query 50387 ATACATGTTTTATAAAATGTTTTTC 50411 | || |||||||| | |||| Sbjct 5488767 GAATATAGGATATAAAATATCTTTC 5488791 >seq3224 Length=21299586 Score = 120 bits (132), Expect = 4e-22 Identities = 129/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844 |||| |||||||| |||||||| || |||||| ||| | || || || || ||||||| Sbjct 2303265 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATAT 2303324 Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904 ||| |||||| |||||||| ||||| || || || || || ||||| || | | || | Sbjct 2303325 TCAAAGATTGGCTTTGATCAATGAAAGCACCTCTCTCAGCTGCCATCTTGAGAACGGTTT 2303384 Query 78905 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 78955 | || | |||||||| | ||||||||||| | |||| | || || |||| Sbjct 2303385 TCTGAGAGATTTCCCACACAGTTTTATAAAGTTGCTTCAGGTCATCAGGAA 2303435 Score = 114 bits (126), Expect = 2e-20 Identities = 108/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 79935 CTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 79994 || |||||||||||| |||||||| |||||||||||||| | || |||||||||| | Sbjct 2317664 CTCTACTCGTTTCATGAAGAGATCCGGAATCCAAAGAGCAAAGAAAAGATCTCTGGCACG 2317723 Query 79995 ATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 80054 |||||||| |||||||| ||||| || | ||| ||||| | | || || ||||||| Sbjct 2317724 CTGCTCCTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCA 2317783 Query 80055 CGGTTCCAAGTATATGGC 80072 || |||| ||| || || Sbjct 2317784 AGGCTCCAGGTAAATAGC 2317801 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119 || ||||||||||| ||||| ||||| ||||| || || || ||||| || ||||| | Sbjct 2306112 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATG 2306171 Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAA 79179 || |||||||| |||| || |||||||| || || || ||||| || || | | |||| Sbjct 2306172 GACTCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAA 2306231 Query 79180 CTATTTCTAAGACCGTA 79196 || ||||| | ||| || Sbjct 2306232 CTGTTTCTTATACCATA 2306248 >seq337 Length=12475526 Score = 116 bits (128), Expect = 5e-21 Identities = 100/124 (81%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| || || ||||| |||||||| ||||| || ||||| || || || || | Sbjct 7490257 CCTCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 7490316 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| ||||| || ||||| || || ||||||||||| ||||| ||||| ||||||| Sbjct 7490317 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 7490376 Query 50102 CAAC 50105 | || Sbjct 7490377 CTAC 7490380 Score = 100 bits (110), Expect = 4e-16 Identities = 94/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 50220 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 50279 |||||| | ||||| || || | ||||||||||||||| ||||| |||||||| ||||| Sbjct 7492360 ATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGC 7492419 Query 50280 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTC 50339 || || || || |||||||| | || || |||||||| |||||| | |||||| || Sbjct 7492420 AATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 7492479 >seq9297 Length=17183 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 49984 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 50043 || ||||| || || ||||| |||||||| |||||||| ||||| || || | ||| || Sbjct 1697 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCTTT 1638 Query 50044 AGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCA 50103 ||||| ||||| | ||||| || || || ||||| ||||||||||| || |||||||| Sbjct 1637 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 1578 Query 50104 ACAAGTCTCTCTCC 50117 || | ||| || || Sbjct 1577 ACCACTCTTTCCCC 1564 >seq9224 Length=17174830 Score = 98.7 bits (108), Expect = 1e-15 Identities = 175/255 (69%), Gaps = 3/255 (1%) Strand=Plus/Plus Query 47703 TCCAGTTGATCCAAACCCTTGAGCTCCTCTATCTGTACTATCTAGAGATTGTACTTCCTC 47762 |||||| || ||||| || | || || || || ||| | || ||| ||||| || Sbjct 3229290 TCCAGTGGAACCAAAACCGCCTGAACCCCTTTCGGTGTCATCCAAAGCTTGAACTTCTTC 3229349 Query 47763 CAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCCGTATTTAC 47822 | |||||||||| | || |||| | || || || || |||| ||| ||| | || || Sbjct 3229350 TATTTCTGGATAAAAAATCCGTTCGCAAATGAGTTGTGCAATTCGATCACCCTTTTTGAC 3229409 Query 47823 ATTGAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCTTC 47882 | ||| | ||| ||| ||||| || | || || | ||||| ||||||||||| Sbjct 3229410 TTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACCAACATTTCCTCTATAATCTTC 3229469 Query 47883 GTCTATTACACCACCTCCTATATCAAT---GCCTTTTAGTGACAGTCCAGACCTAGGAGC 47939 | ||| |||||| |||||| |||||| | |||| | || || |||| ||||| Sbjct 3229470 ATTTATGACACCAGCTCCTACATCAATAAAGTGTTTTGCAGCCAAGCCTGACCGTGGAGC 3229529 Query 47940 TATTCTACCATAGCA 47954 || ||| ||||| || Sbjct 3229530 TACTCTTCCATAACA 3229544 >seq1336 Length=15368434 Score = 95.1 bits (104), Expect = 2e-14 Identities = 177/255 (69%), Gaps = 9/255 (4%) Strand=Plus/Plus Query 47703 TCCAGTTGATCCAAACCCT--TGAGCTCCTCTATCTGTACTATCTAGAGATTGTACTTCC 47760 |||||| || ||||| ||| ||| | ||| | ||| ||| | || ||| ||||| Sbjct 3172634 TCCAGTAGAACCAAAACCTCCTGAACCCCTTTTGGTGTC--ATCCAAAGCTTGAACTTCT 3172691 Query 47761 TCCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCCGTATTT 47820 || | ||||||||| | || |||| | | || ||||| || |||| ||| | ||||| Sbjct 3172692 TCTATTTCTGGATAGAACATCCGTTCACAAATGAGCTGTGCAATTCGATCACGT-TATTT 3172750 Query 47821 -ACATTGAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATC 47879 || | ||| | ||| ||| ||||| | | || || || ||||| |||||||| Sbjct 3172751 GACTTCAAACTTTTCTTTGCCAAAATTAAAGACTACAACACCAATATTTCCTCTATAATC 3172810 Query 47880 TTCGTCTATTACACCACCTCCTATAT---CAATGCCTTTTAGTGACAGTCCAGACCTAGG 47936 ||| ||| | |||||| |||||| || ||| | |||| | || ||||||| || Sbjct 3172811 TTCATCTGTGACACCAGCTCCTACATCTACAACGTGTTTTGCAGCCAAGCCAGACCGTGG 3172870 Query 47937 AGCTATTCTACCATA 47951 ||||| ||| ||||| Sbjct 3172871 AGCTACTCTTCCATA 3172885 >seq170 Length=10713981 Score = 89.7 bits (98), Expect = 7e-13 Identities = 144/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 47703 TCCAGTTGATCCAAACCCTTGAGCTCCTCTATCTGTACTATCTAGAGATTGTACTTCCTC 47762 |||||| || ||||| ||| | || || || || ||| | || ||| ||||| || Sbjct 2521879 TCCAGTGGAACCAAAACCTCCTGAACCCCTTTCCGTGTCATCCAAAGCTTGAACTTCTTC 2521820 Query 47763 CAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCCGTATTTAC 47822 | |||||||||| | || |||| | || ||||| || |||| ||| | | | || || Sbjct 2521819 TATTTCTGGATAAAAAATCCGTTCGCAAATGAGCTGTGCAATTCGATCACACTTTTTGAC 2521760 Query 47823 ATTGAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCTTC 47882 | ||| | ||| ||| |||| || | | || | ||||| ||||||||||| Sbjct 2521759 TTCAAACTTTTCTTTGCCAAAGTTAAACAGTACACCACCAACATTTCCTCTATAATCTTC 2521700 Query 47883 GTCTATTACACCACCTCCTATATCAAT 47909 ||||| |||||| |||||| |||||| Sbjct 2521699 ATCTATGACACCAGCTCCTACATCAAT 2521673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718181413622120