Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20nemestrina_20[refseq_20GCF_5F000956065.1_202015-03-19] 9,733 sequences; 2,948,703,511 total letters Query= NC_005336.1 Length=139962 Score E Sequences producing significant alignments: (Bits) Value seq9224 116 3e-21 seq225 116 3e-21 seq170 105 6e-18 >seq9224 Length=17174830 Score = 116 bits (128), Expect = 3e-21 Identities = 178/254 (70%), Gaps = 0/254 (0%) Strand=Plus/Plus Query 5270 TCGGTGTCGTCCAAGCGGTTAACCTCTTGAACTGCTGGGTGCGATATGCGTTCGCATATT 5329 |||||||| ||||| | ||| |||| | | |||| | | || |||||||| || Sbjct 3229321 TCGGTGTCATCCAAAGCTTGAACTTCTTCTATTTCTGGATAAAAAATCCGTTCGCAAATG 3229380 Query 5330 AGCTGAGCTATCCTGTCTCCCTTCTTAACCTCAAAGTCGCTGTTTCCGAAGTTAAACAGC 5389 || || || || | || ||||| || || ||||| | || || || |||||||| Sbjct 3229381 AGTTGTGCAATTCGATCACCCTTTTTGACTTCAAACTTTTCTTTGCCAAAATTAAACAGT 3229440 Query 5390 ACCACCCCGACATTGCCTCGGTAGTCTTCGTCGATAACGCCAGCGCCCACGTCGATAAAG 5449 || || || ||||| |||| || ||||| | || || ||||| || || || |||||| Sbjct 3229441 ACAACACCAACATTTCCTCTATAATCTTCATTTATGACACCAGCTCCTACATCAATAAAG 3229500 Query 5450 TGTTTGACCGCAAGGCCGGAACGTGGTGCTATGCGTCCGTAGCAACCAGGTGGGAGCTTT 5509 ||||| | || | ||| || ||||| |||| | ||| || || |||| |||||| | Sbjct 3229501 TGTTTTGCAGCCAAGCCTGACCGTGGAGCTACTCTTCCATAACACCCAGAAGGGAGCGCT 3229560 Query 5510 ATCAGAAGGTCAGT 5523 ||| ||| ||| || Sbjct 3229561 ATCTGAATGTCCGT 3229574 >seq225 Length=41818005 Score = 116 bits (128), Expect = 3e-21 Identities = 117/152 (77%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 128874 GGCTACCTCGGGTGCCAGGCACTCTCTGAGATGATACAGTTTTACTTGGAAGAGGTGATG 128933 || ||||| || ||||| || | ||||||||||| ||||||||| |||| ||||||||| Sbjct 37295723 GGTTACCTGGGTTGCCAAGCCTTGTCTGAGATGATCCAGTTTTACCTGGAGGAGGTGATG 37295664 Query 128934 CCGCAGGCGGAAAATCACGGGCCGGACATCAAAGAGCACGTTAACTCGCTGGGAGAAAAG 128993 || || || || || |||| || |||||||| ||||| || ||||| ||||| || || Sbjct 37295663 CCCCAAGCTGAGAACCACGACCCAGACATCAAGGAGCATGTGAACTCCCTGGGGGAGAAT 37295604 Query 128994 CTCAAAACGCTGCGTCTTCGACTGCGTCGCTG 129025 || || || || | || | ||||| ||||| Sbjct 37295603 CTGAAGACCCTCAGGCTGAGGCTGCGGCGCTG 37295572 Score = 82.4 bits (90), Expect = 7e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 129104 AGGCGTTTACAAGGCCATGAGCGAGTTCGACATATTCATCAACTACATAGAATCATACAT 129163 |||||| ||||| |||||||| ||||| ||||| |||||||||||||||||| | ||||| Sbjct 37293315 AGGCGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACATAGAAGCCTACAT 37293256 Query 129164 GAC 129166 ||| Sbjct 37293255 GAC 37293253 >seq170 Length=10713981 Score = 105 bits (116), Expect = 6e-18 Identities = 177/255 (69%), Gaps = 1/255 (0%) Strand=Plus/Minus Query 5270 TCGGTGTCGTCCAAGCGGTTAACCTCTTGAACTGCTGGGTGCGATATGCGTTCGCATATT 5329 || ||||| ||||| | ||| |||| | | |||| | | || |||||||| || Sbjct 2521848 TCCGTGTCATCCAAAGCTTGAACTTCTTCTATTTCTGGATAAAAAATCCGTTCGCAAATG 2521789 Query 5330 AGCTGAGCTATCCTGTCTCCCTTCTTAACCTCAAAGTCGCTGTTTCCGAAGTTAAACAGC 5389 ||||| || || | || | ||| || || ||||| | || || ||||||||||| Sbjct 2521788 AGCTGTGCAATTCGATCACACTTTTTGACTTCAAACTTTTCTTTGCCAAAGTTAAACAGT 2521729 Query 5390 ACCACCCCGACATTGCCTCGGTAGTCTTCGTCGATAACGCCAGCGCCCACGTCGATAAAG 5449 || | || ||||| |||| || ||||| || || || ||||| || || || |||||| Sbjct 2521728 ACACCACCAACATTTCCTCTATAATCTTCATCTATGACACCAGCTCCTACATCAATAAAG 2521669 Query 5450 TG-TTTGACCGCAAGGCCGGAACGTGGTGCTATGCGTCCGTAGCAACCAGGTGGGAGCTT 5508 || |||| || | ||| || |||| |||| | ||| || || |||| |||||| Sbjct 2521668 TGTTTTGCAAGCCAAGCCTGACTGTGGAGCTACTCTTCCATAACACCCAGAAGGGAGCGC 2521609 Query 5509 TATCAGAAGGTCAGT 5523 |||| ||| ||| || Sbjct 2521608 TATCTGAATGTCCGT 2521594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447695925566960