Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20nemestrina_20[refseq_20GCF_5F000956065.1_202015-03-19] 9,733 sequences; 2,948,703,511 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq59 104 2e-17 >seq59 Length=9163144 Score = 104 bits (114), Expect = 2e-17 Identities = 126/169 (75%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 25773 CATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTC 25832 ||| || |||| ||||| || |||| |||||||||||| || || || || || | ||| Sbjct 414111 CATATCTCTGTATTCTGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGACCCAAGTC 414170 Query 25833 TCCATCTTCCCTGTGCTCAAAGCCCCTCT-TATCCAAAAAGTCTCTGGAACCATTGGCGT 25891 || ||||| ||| || | | |||| | ||||||||||||| ||| |||||||| | Sbjct 414171 CCCTTCTTCTCTG-GCGGAGAACCCCAGGCTGTCCAAAAAGTCTCGGGATCCATTGGCAT 414229 Query 25892 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 25940 ||||||| || || ||||| || |||||||| | ||||| || || Sbjct 414230 CCCAGATTTTCACTCCCTTGGAAGACAGCTCTTTAGCATTTGTAGATCC 414278 Score = 87.8 bits (96), Expect = 1e-12 Identities = 110/150 (73%), Gaps = 1/150 (1%) Strand=Plus/Plus Query 25506 GCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATG 25565 || |||||||||||||| || ||||||||||||||| || || || || | |||||| Sbjct 409666 GCAATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGCACACCTAGGCCCATG 409725 Query 25566 TCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACA 25625 | | ||||| |||||||| ||||| || || ||||| || ||| || ||||| || Sbjct 409726 T-CTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTTCACCACATAGAACTGGCA 409784 Query 25626 CATGGTGTAGCACGGAGGAAGAGCTATAAG 25655 | | | ||| ||||| || || || || Sbjct 409785 GAGAGCATGGCATGGAGGCAGTGCCATCAG 409814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340097252559009