Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20nemestrina_20[refseq_20GCF_5F000956065.1_202015-03-19] 9,733 sequences; 2,948,703,511 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq2780 87.8 9e-13 seq8890 84.2 1e-11 seq781 84.2 1e-11 seq114 82.4 4e-11 >seq2780 Length=23506373 Score = 87.8 bits (96), Expect = 9e-13 Identities = 84/106 (79%), Gaps = 3/106 (3%) Strand=Plus/Plus Query 11425 AGGGAAATATAGAATTAATAAAAAATCAA-ATTGGCCCATGAAAGGATCGAACCTTCGAC 11483 ||||||| | | || || |||||| | | | |||||| | |||||||||| |||| Sbjct 1235444 AGGGAAAAAAACAA--AACAAAAAAGCGAGACTGGCCCGTACGGGGATCGAACCCGCGAC 1235501 Query 11484 CTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||| ||||||||||||| ||||||| |||||||||||||| |||| Sbjct 1235502 CTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGGCC 1235547 >seq8890 Length=24368223 Score = 84.2 bits (92), Expect = 1e-11 Identities = 71/87 (82%), Gaps = 1/87 (1%) Strand=Plus/Minus Query 11444 AAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 || ||| |||| |||||| | |||||||||| ||||||| ||||||||||||| | Sbjct 24195242 AAGAAAACAAACATGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCA 24195183 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| |||||||||||||| |||| Sbjct 24195182 CGCTCTAACCAACTGAGCTAACCGGCC 24195156 >seq781 Length=2996164 Score = 84.2 bits (92), Expect = 1e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||| | |||||||||| ||||||| ||||||||||||| ||||||| ||||| Sbjct 2271099 TTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAA 2271158 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 2271159 CTGAGCTAACCGGCC 2271173 Score = 84.2 bits (92), Expect = 1e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 2676046 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 2676105 Query 11528 CCG 11530 ||| Sbjct 2676106 CCG 2676108 Score = 84.2 bits (92), Expect = 1e-11 Identities = 81/105 (77%), Gaps = 5/105 (5%) Strand=Plus/Minus Query 11426 GGGAAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCT 11485 |||||| | |||| |||| | | || |||||| | |||||||||| |||||| Sbjct 2791359 GGGAAAAAAAGAA-----AAAACAACTAAGTGGCCCGTACGGGGATCGAACCCGCGACCT 2791305 Query 11486 TCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 | ||||||||||||| ||||||| |||| ||||||||| ||||| Sbjct 2791304 TGGCGTTATTAGCACCACGCTCTAACCAGCTGAGCTAACCGGCCG 2791260 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 2291390 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 2291449 Query 11528 CC 11529 || Sbjct 2291450 CC 2291451 >seq114 Length=10248520 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 9004742 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 9004683 Query 11528 CC 11529 || Sbjct 9004682 CC 9004681 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261460181668708