Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20nemestrina_20[refseq_20GCF_5F000956065.1_202015-03-19] 9,733 sequences; 2,948,703,511 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq225 188 1e-42 seq381 123 4e-23 >seq225 Length=41818005 Score = 188 bits (208), Expect = 1e-42 Identities = 179/229 (78%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693 ||||| |||| || || |||| |||||| ||||| || |||| || |||||||||||| Sbjct 16434537 GTCTGGAACAACTGCTCATCACCCCATTCCGGATGCTCCTGTTTAAGCACATCGCACACT 16434596 Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753 ||||||||||| | |||||||| || || |||||||| |||||||||||||| ||||| Sbjct 16434597 CTGTTGTGTTCTCGCAGCCAGATTGTGGCATACATCATCAGACCAGGCACCAGACCAAAG 16434656 Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813 |||| || || ||||| | |||| || || || |||| ||||| |||||||| | Sbjct 16434657 ACCTCCTGCCCCACAGCAAACCGCAGATGCTCAGGGACTTGAGGAGGGTAGATCATCTCT 16434716 Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCT 9862 |||| ||||||||| | ||| |||||||| || || ||||| |||| Sbjct 16434717 GCCTGAGTATCTTTGACTGTGGGAGGATACATCTCTCCATCAATTATCT 16434765 Score = 168 bits (186), Expect = 9e-37 Identities = 231/323 (72%), Gaps = 0/323 (0%) Strand=Plus/Plus Query 8654 TTGAGGAGCTCCTTATTGGGAACTCGGAACGCGGCCAACGGACACCCTTTGACGTTGCTA 8713 |||| |||||| || ||||| | ||| | | || ||||| || || ||||| | Sbjct 16432176 TTGATGAGCTCTGGATCTGGAACACTGAATGAAGTAAAGGGACAGCCCTTCACGTTATTG 16432235 Query 8714 CAGACTAGAGACTGGATAGTTGCACTCTTGACGATCCCAAACCCCACGTCTCCGCCGAAG 8773 |||| |||||||| || | ||| | |||| ||| ||| ||||| ||||| || || Sbjct 16432236 CAGATGAGAGACTGAATTGAGGCAGTGTTGATGATTTGAAAACCCACTTCTCCACCAAAA 16432295 Query 8774 GTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAA 8833 ||||| || |||||||| | || || || || || || |||| || ||||| | ||| Sbjct 16432296 GTGCTTGGCTTCCAGTAGGCAGGAGAACATATAACATTACCCATAAGTCCTTTCAAGGAG 16432355 Query 8834 AACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCC 8893 ||||| || || | || | ||| ||||||| |||||||| | ||||| |||||||| Sbjct 16432356 AACGGTGCTCCAACTTCTACCATGGTCTCACCAAAGATGGCATCTGGACGAGGCTTTTCT 16432415 Query 8894 ACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCG 8953 |||| | | | |||| ||||||||| |||||||| || || || || | || Sbjct 16432416 ACCAGAAGGGCAGGATACAGCTCCACAGCATCGATGTCACCATAGAGTGCTTCCAACTCT 16432475 Query 8954 GCAGCGATTTCCTTTTCTCCTGT 8976 |||| ||||||||||||||||| Sbjct 16432476 GCAGACATTTCCTTTTCTCCTGT 16432498 Score = 132 bits (146), Expect = 7e-26 Identities = 124/158 (78%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087 |||||||||||| ||||| ||||| ||||| || || |||||| ||| ||| | || Sbjct 16435997 TCTTACCCCATGGCCCAGCCCTTTGGTGAAAGCTGGCCCTCGCTTATGATCTGTCTTGAA 16436056 Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147 |||||| |||||||| || ||| |||| || |||||||| | ||| |||||||||||||| Sbjct 16436057 AAACTGATGCGTGAAGTGCTGGGCAAAGAATGCAAACATCATGTTTGTGCCCTGGGGATC 16436116 Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAA 10185 || |||| | || | |||||| ||||||||||| Sbjct 16436117 AGGGATGAACTTTCTTCTTAGAAGAAATTTTTCCACAA 16436154 Score = 107 bits (118), Expect = 3e-18 Identities = 119/156 (76%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 10285 AGTCACCTTTGAC-CCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTT 10343 |||||||||| || |||||| |||||||| || || | ||| || ||||| || || Sbjct 16436606 AGTCACCTTTCACACCCAAG-GGAGTTGGGCAGTCATCAGGCACAGGAGGAAGGGCTCTG 16436664 Query 10344 GCGTAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAG 10403 | ||||||||||| || ||||| |||||||||||| ||| | ||||| | ||||| Sbjct 16436665 GTATAATAGGAGAGGTTAGAGAAGGCTTCCCAGCTTTTGTAGCCATAGTCAACATTGTAA 16436724 Query 10404 ATGGGAGGGCTGTCAATCAAATCGGATCTACCTGAA 10439 | || || ||||||||||||| ||||| ||||| Sbjct 16436725 GTTGGTGGACTGTCAATCAAATGTGATCTGGCTGAA 16436760 Score = 91.5 bits (100), Expect = 2e-13 Identities = 139/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 9322 CTTACTCGGCCAGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGGGTC 9381 ||||| | |||||| ||||| | ||||| ||||| || | ||||||||| || || | Sbjct 16433944 CTTACCCTGCCAGCAATTTGCCTGGTGAATGATTCAACAAACTGGGTAATTCCATGTTCC 16434003 Query 9382 ATGAGTATGGAATTGTTGTAAACGAA--GTTAATGTAGTCATACTTTGTTTTATCAATCT 9439 | | ||| || |||||||| | || ||| || ||| || || | || ||| | Sbjct 16434004 AGTAATATAGAGTTGTTGTAGATAAACTGTTGAT--AGTTGTATTTCTGGTCATGAATTT 16434061 Query 9440 CAAACGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATAC 9499 ||| || |||| || | |||||||||||| | |||||||||| | | |||| Sbjct 16434062 GAAAGTTGTCAGGCAGAAGGGGATGCCAGTGATAGAGGGTGTTAAACTCAGCAGCAATAC 16434121 Query 9500 GATTTTGGTACTGGAA 9515 |||||||||||||||| Sbjct 16434122 GATTTTGGTACTGGAA 16434137 >seq381 Length=9870344 Score = 123 bits (136), Expect = 4e-23 Identities = 169/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 |||||||||| ||| |||| || || || || ||||| || |||||||| |||| | Sbjct 9550395 TCTTGACGATGTTAAAGCCCATCTCGCCACCAAAAGTGCTTGGCTTCCAGTACTCCGGAG 9550336 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 | |||||| ||| | | ||| || ||||||||||| |||||||| | ||| | || | Sbjct 9550335 AACAGATGGGATTCCCTAGGAGACCCTTGAGGGAAAAGGGAGCCCCAATCTCTATCATAC 9550276 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 |||| || ||||| | ||| ||| || |||||| | | | || | ||| ||||||| Sbjct 9550275 TCTCCCCAAAGATAGAGTTTGGATGGCACTTTTCAAGAAGCAGCCCAGGGTAGAACTCCA 9550216 Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCT 8974 || || |||||||| || || || | || || || || ||||| |||||| Sbjct 9550215 ACGCGTCAATGTCTCCATACAGCTCCTCCAACTCCGCTGCCATCTCCTTCTCTCCT 9550160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708438599101520