Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20nemestrina_20[refseq_20GCF_5F000956065.1_202015-03-19] 9,733 sequences; 2,948,703,511 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq7446 118 1e-21 seq7002 116 3e-21 seq3 111 1e-19 seq758 100 3e-16 seq547 96.9 3e-15 seq1670 95.1 1e-14 seq9224 87.8 2e-12 seq1226 87.8 2e-12 seq1225 87.8 2e-12 seq5557 84.2 2e-11 >seq7446 Length=17224310 Score = 118 bits (130), Expect = 1e-21 Identities = 165/231 (71%), Gaps = 3/231 (1%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || |||| || |||||||||| ||||| || || || ||| | ||| || || Sbjct 13346887 CCACCTCGCAGGCGCAACACCAGGTGCAGGGTGGACTC---TTGGATGTTGTAGTCTGAG 13346943 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| | ||| ||||||||||| | | |||| || | | ||||| || || || Sbjct 13346944 AGAGTGCGGCCATCTTCCAGCTGTTTGCTGGCAAATATCAGACGCTGCTGGTCAGGTGGG 13347003 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 ||||| || ||||| | |||||| || |||||| | | |||||| | | ||||| Sbjct 13347004 ATACCCTCCTTGTCTTGAATTTTGGCTTTGACGTTCTCAATGGTGTCACTGGGCTCGACC 13347063 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTT 95011 |||| ||||||||||| || | || || |||||||||||||||||| || Sbjct 13347064 TCAAGGGTGATGGTTTTGCCCGGGAGGGTCTTCACAAAGATCTGCATGTTT 13347114 >seq7002 Length=12659153 Score = 116 bits (128), Expect = 3e-21 Identities = 165/231 (71%), Gaps = 1/231 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || |||| || |||||||||| ||||| || || || || || | ||| || || Sbjct 9467041 CCACCTCGCAGGCGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAG 9467100 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| | ||| ||||||||||| ||| |||| || | | ||||| || || || Sbjct 9467101 AGAGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGG 9467160 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 ||||| || ||||| | |||||| || ||||| | | |||||| | | ||||| Sbjct 9467161 ATACCCTCCTTGTCTTGAATTTTGGCTTTGAC-ATTCTCATGGTGTCACTGGGCTCGACC 9467219 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTT 95011 | | ||||||||||| || || || || |||||||||||||||||| || Sbjct 9467220 TTGAGGGTGATGGTTTTGCCCGTGAGGGTCTTCACAAAGATCTGCATGTTT 9467270 >seq3 Length=16319837 Score = 111 bits (122), Expect = 1e-19 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||||||| |||||| ||||||| | || ||||| || |||||||| ||||| || Sbjct 4626347 ATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTT 4626288 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || | || ||||||||||| | | |||||| | | || || |||| ||||| Sbjct 4626287 ATCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGAT 4626228 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || ||||| || || ||||| ||||||||||| Sbjct 4626227 GGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 4626192 Score = 98.7 bits (108), Expect = 9e-16 Identities = 117/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 94774 TTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATA 94833 ||| || || || ||||| |||| |||||||||| ||| || || || || | ||| || Sbjct 4628634 TTAGACACCCCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTA 4628575 Query 94834 ATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATC 94893 || || ||| ||| ||||||||||| || ||||||| || || ||||| || Sbjct 4628574 GTCAGACAGGGTGCGTCCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTC 4628515 Query 94894 TGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGAC 94932 ||||| || ||||| ||||| | || ||||||||||| Sbjct 4628514 AGGAGGGATGCCTTCCTTGTCCTGGATCTTTGCCTTGAC 4628476 >seq758 Length=2790677 Score = 100 bits (110), Expect = 3e-16 Identities = 169/242 (70%), Gaps = 2/242 (1%) Strand=Plus/Minus Query 94766 TTAAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGC 94825 |||| | || ||| || || |||| |||| |||| ||||| || || ||||| || Sbjct 2565684 TTAAGAATTAACAG-CCACCCCTCAGGCGCAGGACCAGGTGCAGGGTTGACTCCTTCTGG 2565626 Query 94826 ACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885 | ||| || || | |||| | ||| |||||||| || || ||||||| | || Sbjct 2565625 ATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTC 2565566 Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 ||||| || || || || |||||||| || | || || ||||| || ||| ||| Sbjct 2565565 TGCTGGTCGGGGGGGATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTG 2565506 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 ||| | | || || || | |||||||| || || || || |||||||| ||||||||| Sbjct 2565505 TCACTGGGCTCCAC-TCCAGGGTGATGGTCTTGCCGGTCAGGGTTTTCACGAAGATCTGC 2565447 Query 95006 AT 95007 || Sbjct 2565446 AT 2565445 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||||||| || || ||||||| | || ||||| || || ||||| ||||| || Sbjct 2565143 ATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTT 2565084 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || | ||||| ||||| || ||| |||||| | | || || |||| ||||| Sbjct 2565083 ATCCTGGATTTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGAT 2565024 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || || || || || ||||| ||||||||||| Sbjct 2565023 GGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 2564988 >seq547 Length=9034655 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||||||||||||||| ||| ||| || | ||||| || || || ||||| || || Sbjct 8022803 ATCCTCCAGCTGTTTGCCGGCAAGTATCAGATGCTGCTGGTCAGGTGGGATACCCTCCTT 8022744 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | |||||| || ||||| | | |||||| | | | ||| |||| ||||| Sbjct 8022743 GTCTTGAATTTTGGCTTTGACATCCTCATTGGTGTCACTGGGCTTGACCTCAAGAGTGAT 8022684 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || || ||||| || ||||||||||||||||| Sbjct 8022683 GGTCTTGCCCGTAAGGGTCTTCACAAAGATCTGCAT 8022648 >seq1670 Length=4706099 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851 || |||||| | || | |||||| |||||||| | || || || || ||| Sbjct 2974239 TCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCC 2974180 Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| ||||| || || || ||||||| | |||||||||||| |||||||| ||||| || Sbjct 2974179 ATCTTCCAGGTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTT 2974120 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || | || || ||||| || | | || || | | | || || || | ||||| Sbjct 2974119 ATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTGAT 2974060 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCA 95006 ||| || || || || |||||||| || ||||||| Sbjct 2974059 GGTCTTCCCCGTGAGGGTTTTCACGAAAATCTGCA 2974025 >seq9224 Length=17174830 Score = 87.8 bits (96), Expect = 2e-12 Identities = 206/307 (67%), Gaps = 3/307 (1%) Strand=Plus/Plus Query 43609 GATCTTCTTCCAGTTCAGGGTAAGATATCTTTTCACAAATGAGCTGGGCGATTCTGTCTC 43668 || ||||||| | ||| || ||| | ||| ||| |||||||| || || |||| || | Sbjct 3229340 GAACTTCTTCTATTTCTGGATAAAAAATCCGTTCGCAAATGAGTTGTGCAATTCGATCAC 3229399 Query 43669 CCTGCAGCACGTAAAAAGTGTGCTTATCGTGGTTGAATAGCACCACGCCCACGTTTCCCC 43728 ||| || | ||| | | || | || || || || || || || ||||| | Sbjct 3229400 CCTTTTTGACTTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACCAACATTTCCTC 3229459 Query 43729 TATAGTCTTCGTCTATTACGCCCGCGCCTACGTCTATTCCGTGACGTACTGCCAAGCCTG 43788 |||| ||||| | ||| || || || ||||| || || ||| | | |||||||||| Sbjct 3229460 TATAATCTTCATTTATGACACCAGCTCCTACATCAATAAAGTGTTTTGCAGCCAAGCCTG 3229519 Query 43789 ATCTGGCGGCCACCCTGCCATAATGTCCGTGAGGCACGGCTACCCGTATGTCCGTTTTTA 43848 | | | || || || |||||| || ||| | |||| | | ||||||||||| | Sbjct 3229520 ACCGTGGAGCTACTCTTCCATAACACCCAGAAGGGAGCGCTATCTGAATGTCCGTTTTCA 3229579 Query 43849 CGAG-GCTGTAGCCTTTGGGTTCTATGGCCAAATCTTGGGCGCTGTACAGATCGTA-CCC 43906 | || ||| | || | ||| ||| | |||| | ||| |||||||| ||||| ||| Sbjct 3229580 CAAGAGCTTTCTCC-ATAGGTGGTATTGTATAATCATAGGCACTGTACAGGTCGTAGCCC 3229638 Query 43907 GGCGGAG 43913 | | ||| Sbjct 3229639 GCCAGAG 3229645 >seq1226 Length=1830524 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||| |||| || || || || || | ||||||||| | ||||| | |||||| Sbjct 1001447 CACCACCTGCAGGGTGGACTCTTTCTGGATGTTATAATCTGAAAGAGTGTGGCCATCCTC 1001388 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 || |||||| || |||| || | ||||| || || || || || || ||||||| Sbjct 1001387 CAACTGTTTGCCCACAAATATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCATG 1001328 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || || || ||||| | |||||| | | | ||| |||| ||||||||| | Sbjct 1001327 GATCTTGGCTTTGACATTTTCACTGGTGTCACTGGGCTGGACCTCAAAGGTGATGGTTCT 1001268 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 ||| || || || || ||| ||||||||||| Sbjct 1001267 TCCTGTGAGGGTCTTTACAGAGATCTGCATG 1001237 >seq1225 Length=21025059 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||| || || || ||||||| | |||||||||||| |||||||| ||||| || Sbjct 9810187 ATCTTCCAATTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTT 9810128 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || | || || ||||| || | |||| | | || || |||| ||||| Sbjct 9810127 ATCCTGGATATTGGCCTTTACATTTTCTGTTGTGTTCAAGGGTTCAACCTCAAGGGTGAT 9810068 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || || ||||| ||||||||||| |||||||| Sbjct 9810067 GGTCTTCCCTGTAAGGGTTTTCACAAAAATCTGCAT 9810032 >seq5557 Length=63123227 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||||||||||||||| || |||| || | | ||||| || | || || || || || Sbjct 51838237 ATCCTCCAGCTGTTTGCCCGCAAATATCAGACGCTGCTGGTCAAGTGGGATGCCCTCCTT 51838296 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 | | | |||||| |||||||| | |||||| | | ||||| || | ||||| Sbjct 51838297 GGCTTGAATTTTGGCCTTGACATTCTCAGTGGTGTCACTGGGCTCGACCTCGAGGGTGAT 51838356 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || || || || || ||||||||||||||||| Sbjct 51838357 GGTCTTGCCTGTGAGGGTCTTCACAAAGATCTGCAT 51838392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448236659771880