Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20nemestrina_20[refseq_20GCF_5F000956065.1_202015-03-19] 9,733 sequences; 2,948,703,511 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq8890 168 1e-37 seq781 163 4e-36 seq7113 131 3e-26 >seq8890 Length=24368223 Score = 168 bits (186), Expect = 1e-37 Identities = 198/268 (74%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||| |||| | | || || ||||| || || ||||| |||||||| || Sbjct 23864185 CGCTAAGCGTCACCGCAAGGTTTTGCGGGACAACATTCAGGGCATCACTAAGCCAGCCAT 23864126 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || || ||||| || || || ||||||||| | ||||| | ||||||| |||| Sbjct 23864125 CCGCCGCCTTGCTCGCCGCGGCGGTGTCAAGCGTATTTCTGGCCTTATCTATGAGGAGAC 23864066 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| |||| ||||| | ||||| ||| ||| || | |||||| || || || || Sbjct 23864065 CCGTGGTGTTCTGAAGGTGTTCCTGGAGAACGTGATTCGTGATGCAGTCACTTACACGGA 23864006 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| |||||||| |||||||| || | |||||| | |||||||| |||| || || || Sbjct 23864005 GCATGCTAAACGCAAGACTGTAACAGCAATGGATGTGGTCTATGCGCTGAAGCGACAGGG 23863946 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | |||| || || || ||||| Sbjct 23863945 ACGCACTCTTTACGGCTTCGGTGGTTAA 23863918 Score = 154 bits (170), Expect = 2e-33 Identities = 190/260 (73%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||||| ||||| | || || ||||||||||| || ||||| ||||| ||||| Sbjct 23686158 GCTAAGCGCCATCGTAAGGTGCTCCGGGATAACATCCAGGGCATCACAAAGCCGGCTATT 23686217 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||| ||||||| || ||||| |||||||| | || || | ||||||| || | | Sbjct 23686218 CGCCGTTTGGCTCGGCGCGGTGGCGTCAAGCGCATTTCCGGTCTCATCTATGAGGAAACT 23686277 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| ||||| | ||| | ||| |||||| | || ||| | |||||| ||| Sbjct 23686278 CGAGGTGTGCTGAAGGTTTTCTTAGAGAACGTTATTCGAGACGCTGTTACCTATACGGAG 23686337 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || || |||||||| |||||||| | || ||||| | |||||||| || Sbjct 23686338 CACGCCAAGCGCAAAACTGTCACAGCCATGGATGTAGTATATGCTCTAAAACGTCAGGGG 23686397 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | | ||||| || || Sbjct 23686398 CGCACTCTGTATGGCTTCGG 23686417 Score = 150 bits (166), Expect = 3e-32 Identities = 192/262 (73%), Gaps = 2/262 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| | | || || || || ||||||||||||||||||||||| | Sbjct 23771787 CGCCAAGCGTCACCGCA-AGGTGTTGCGCGACAATATCCAAGGAATCACCAAGCCAGCCA 23771729 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || |||||||| || || || ||||||||| | ||||| | ||||||| |||| Sbjct 23771728 TCCGCCGCCTGGCTCGCCGCGGCGGCGTCAAGCGTATTTCTGGCCTCATCTATGAGGAGA 23771669 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 ||| | || ||||| | || || | | || |||| |||||| || ||| || | Sbjct 23771668 CTCGCGGAGTGCTGAAGGTTTTTCTGGAAAATGTAATCCGCGATGCTGTCACCTACACGG 23771609 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| ||||| ||||| ||||| ||||||| | || || || | || || || | Sbjct 23771608 AGCACGCCAAACGCAAGACGGTCACAGCCATGGACGTGGTGTACGCGCTCAAGCGCCAGG 23771549 Query 16671 GCCGTAAGATTTATGGTTTTGG 16692 | || | | ||||| || || Sbjct 23771548 GACGCACTCTGTATGGCTTCGG 23771527 Score = 150 bits (166), Expect = 3e-32 Identities = 192/262 (73%), Gaps = 2/262 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| | |||| |||||||||||||| || || ||||| || || | Sbjct 23787455 CGCCAAGCGTCACCGCAAAG-TCTTGCGAGATAACATCCAGGGTATTACCAAACCTGCCA 23787513 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| ||||| ||||| || || || |||||||| | |||||| | ||||||| |||| Sbjct 23787514 TCCGGCGTCTTGCTCGGCGCGGCGGTGTCAAGCGCATTTCTGGACTCATCTATGAGGAGA 23787573 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || ||||| | || || ||| ||| |||| ||| ||| | || || | Sbjct 23787574 CCCGCGGGGTACTGAAGGTGTTTCTAGAGAACGTGATCCGTGACGCTGTTACTTACACGG 23787633 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || |||||||| || | |||||| | ||||| || | ||||| || | Sbjct 23787634 AGCACGCCAAGCGCAAGACTGTAACAGCGATGGATGTGGTCTACGCTCTCAAACGACAGG 23787693 Query 16671 GCCGTAAGATTTATGGTTTTGG 16692 | || | ||||||| || || Sbjct 23787694 GACGCACTCTTTATGGCTTCGG 23787715 Score = 140 bits (154), Expect = 5e-29 Identities = 189/261 (72%), Gaps = 2/261 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || |||| | | || || || |||||||| || ||||||||||| || || Sbjct 23603740 GCCAAGCGCCACCGCA-AGGTGTTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 23603798 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| |||||||| || ||||| || |||||| | ||||||| || |||| || |||| Sbjct 23603799 CCGGCGTCTGGCCCGGCGTGGAGGTGTCAAGAGGATCTCTGGTCTGATCTACGAGGAGAC 23603858 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || | ||| | || | ||| ||| |||| ||| ||| || |||||| || Sbjct 23603859 TCGCGGGGTGCTCAAGGTGTTTTTGGAGAACGTGATCCGTGACGCTGTCACCTATACGGA 23603918 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || || ||||| ||||| | ||||| | ||||| || | || || || || Sbjct 23603919 ACACGCCAAGCGCAAGACGGTCACTGCTATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 23603978 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 || | ||||||| ||||| Sbjct 23603979 ACGCACCCTTTATGGCTTTGG 23603999 Score = 138 bits (152), Expect = 2e-28 Identities = 198/279 (71%), Gaps = 0/279 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || || | | || || |||||||||||||| ||||| ||||| || || Sbjct 23609115 CGCCAAGCGCCACCGGAAAGTGCTGCGGGATAACATCCAAGGCATCACTAAGCCGGCCAT 23609056 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || || || ||| | |||||||| || || || |||| || ||| | || || |||| Sbjct 23609055 TCGGCGCCTTGCTAGGCGTGGTGGGGTTAAACGGATCTCCGGTTTGATTTACGAGGAGAC 23608996 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | |||| | || | || || ||| ||| |||| || || | |||||| || Sbjct 23608995 CCGAGGTGTTCTTAAAGTTTTTCTGGAGAACGTGATCCGGGACGCCGTGACCTATACGGA 23608936 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||||||||| |||||||| | || || || | || || ||||| Sbjct 23608935 GCACGCCAAGCGCAAGACTGTCACTGCCATGGATGTGGTTTACGCGCTCAAGCGCCAAGG 23608876 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTTCTAATCA 16710 || | | || ||||| || |||||| || || ||| Sbjct 23608875 ACGCACTCTATACGGTTTCGGCGGTTAATATTTTAGTCA 23608837 >seq781 Length=2996164 Score = 163 bits (180), Expect = 4e-36 Identities = 192/260 (74%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| || |||| | || || || |||||||| || |||||||||||||| ||| Sbjct 2824783 GCCAAGCGCCACCGCAAAGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCAGCCATC 2824724 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || || || || ||||| || || ||||| |||| || | ||||||| |||| Sbjct 2824723 CGGCGCCTTGCCCGCCGTGGCGGTGTGAAGCGCATCTCCGGCCTCATCTATGAGGAGACC 2824664 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || ||||| ||||||| ||| ||| |||| || ||| | ||| || ||| Sbjct 2824663 CGCGGGGTGCTGAAGGTCTTCCTGGAGAACGTGATCCGGGACGCTGTGACCTACACGGAG 2824604 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || ||||| |||||| ||||||| | |||||||| |||| || || ||| Sbjct 2824603 CACGCCAAGCGCAAGACGGTCACCGCCATGGACGTAGTCTATGCGCTGAAGCGCCAGGGC 2824544 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | |||||||||| || Sbjct 2824543 CGCACTCTTTATGGTTTCGG 2824524 Score = 150 bits (166), Expect = 3e-32 Identities = 194/268 (72%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || |||| || || || |||||||| || |||||||||||||| || Sbjct 2089602 CGCTAAGCGCCACCGCAAGGTGCTGCGTGACAACATCCAGGGCATCACCAAGCCAGCCAT 2089661 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || || ||||| || || || || ||||| ||||||| | |||| || |||| Sbjct 2089662 CCGGCGCCTTGCTCGCCGCGGCGGCGTGAAGCGCATCTCTGGCCTCATCTACGAGGAGAC 2089721 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || |||| ||||||| ||| ||| |||| || ||| | ||| || || Sbjct 2089722 CCGTGGGGTGCTGAAAGTCTTCCTGGAGAACGTGATCCGGGACGCTGTGACCTACACGGA 2089781 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| |||||||| | || || || |||| || || || Sbjct 2089782 GCACGCCAAGCGCAAGACGGTCACCGCCATGGATGTGGTTTACGCGCTGAAGCGCCAGGG 2089841 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | || ||||| || ||||| Sbjct 2089842 TCGCACCCTCTACGGTTTCGGCGGTTAA 2089869 Score = 147 bits (162), Expect = 3e-31 Identities = 189/261 (72%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 2096843 CGCTAAGCGCCACCGCAAGGTGCTGCGTGACAACATCCAGGGCATCACCAAGCCGGCCAT 2096784 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || || ||||| || || || || |||||| ||||||| | |||| || |||| Sbjct 2096783 CCGGCGCCTTGCTCGCCGCGGCGGCGTGAAGCGTATCTCTGGCCTCATCTACGAGGAGAC 2096724 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || |||| ||||||| ||| ||| |||| || ||| | ||| || || Sbjct 2096723 CCGTGGGGTGCTGAAAGTCTTCCTGGAGAACGTGATCCGGGACGCTGTGACCTACACGGA 2096664 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| |||||||| | || || || |||| || || || Sbjct 2096663 GCACGCCAAGCGCAAGACGGTCACCGCCATGGATGTGGTTTACGCGCTGAAGCGCCAGGG 2096604 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 || | | || ||||| || Sbjct 2096603 TCGCACCCTCTACGGTTTCGG 2096583 Score = 102 bits (112), Expect = 1e-17 Identities = 179/261 (69%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || |||| | || || || || || || || |||||||||||||| || Sbjct 2046550 CGCTAAGCGCCACCGCAAAGTCCTGCGCGACAATATTCAGGGTATCACCAAGCCAGCCAT 2046609 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || || ||||| |||| || | | || || |||| Sbjct 2046610 CCGACGCCTGGCACGGCGAGGAGGCGTTAAGCGCATCTCAGGCCTTATATACGAGGAGAC 2046669 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| | || | ||| || |||| ||||| | ||| || || Sbjct 2046670 GCGCGGAGTTCTTAAGGTGTTTTTGGAGAATGTGATCCGCGATGCAGTTACCTACACGGA 2046729 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || || ||||| ||||| ||||| ||||||| | || || || | || || || || Sbjct 2046730 ACATGCCAAACGCAAGACAGTCACGGCCATGGACGTGGTTTACGCGCTCAAGCGCCAGGG 2046789 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 || | | ||||| ||||| Sbjct 2046790 TCGCACCCTCTATGGCTTTGG 2046810 >seq7113 Length=14060431 Score = 131 bits (144), Expect = 3e-26 Identities = 177/244 (73%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||||||||| || |||| | || || |||| ||||| || || ||||||||||| || | Sbjct 21012 CGCTAAGCGCCACCGCAAGGTC-CTGAGAGACAACATTCAGGGCATCACCAAGCCTGCCA 20954 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | || ||||| ||||| ||||| || || ||||| ||||||| | | || || |||| Sbjct 20953 TTCGGCGTCTAGCTCGGCGTGGCGGCGTTAAGCGGATCTCTGGCCTCATTTACGAGGAGA 20894 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | ||| ||||| | ||||| ||| ||| || | || || || ||| |||| Sbjct 20893 CCCGCGGTGTGCTGAAGGTGTTCCTGGAGAACGTGATTCGGGACGCAGTCACCTACACCG 20834 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| ||||| |||||||| | || || || | || || || | Sbjct 20833 AGCACGCCAAGCGCAAGACCGTCACAGCCATGGATGTGGTGTACGCGCTCAAGCGCCAGG 20774 Query 16671 GCCG 16674 | || Sbjct 20773 GGCG 20770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79066301049969