Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20nemestrina_20[refseq_20GCF_5F000956065.1_202015-03-19] 9,733 sequences; 2,948,703,511 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq37 181 1e-40 seq5558 98.7 1e-15 seq237 89.7 5e-13 seq337 87.8 2e-12 >seq37 Length=10148950 Score = 181 bits (200), Expect = 1e-40 Identities = 525/808 (65%), Gaps = 17/808 (2%) Strand=Plus/Plus Query 21122 TTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCC 21181 || ||||| || |||||||| || | ||| ||| ||| | || |||| | |||| Sbjct 6162983 TTCATTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGATTCGACACCACTCCC 6163042 Query 21182 ATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATA 21241 || | ||||| || | ||||| || || || || || ||||||| | ||| ||| Sbjct 6163043 ATCCTCTGATACTCCTTTACTCTCTTCTCAAAGAAGTTCGTCTTTC-----AGTGAAATA 6163097 Query 21242 GATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGAT 21301 |||||||| |||||||| || || | | || | || || |||||||||| | Sbjct 6163098 TTCTCCATAAAGTCAAATGGGTTCTCTACTCTGAAAACCTTGCTAAAACCCAGTTCCGGC 6163157 Query 21302 AATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATC 21361 | ||| ||||| ||||| || || ||||| ||||| |||||||| || || Sbjct 6163158 ATG--TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATG 6163215 Query 21362 AATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATT 21421 | || ||||| | || | || | || | |||||| || || | | |||| Sbjct 6163216 AGCTTCACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCATTGATAATT 6163275 Query 21422 ATATTTATTATCCTAGATGTACTAGGG---GGATACAATAATTGTTTAAACATCAAACAT 21478 | | | |||| || | | | || | ||| | || || ||||||| || Sbjct 6163276 CTTTCTCTTATTCTCTCC-TCCAATGGTTTGTGTACCAGG--TGATTGAACATCAGGCAA 6163332 Query 21479 GCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCG 21538 ||||||||||| || ||||| ||||| | ||| || | |||||| ||||| || | || Sbjct 6163333 GCAAAATCACAGTGTAAACCCTCATCTCCACTAATAAGTTCATTGGAAAAGGTGAGGCCA 6163392 Query 21539 GGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATG 21598 ||||| | ||||| || || | ||| ||||| || ||||| || |||||| ||| Sbjct 6163393 GGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAG---ATG 6163449 Query 21599 CCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATC 21658 || || | |||||||| | || | ||||| || || |||| | |||| ||| ||| Sbjct 6163450 CCTTCCGCTGCAGCAAAGACTACAACACGTTCCCCATAGGTAGCTGCTTTGTCCCCAATC 6163509 Query 21659 CATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAAA 21718 || | ||||| | |||||| | || | |||| || || ||||| || || || Sbjct 6163510 CAGTGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAG 6163569 Query 21719 AGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCA 21778 || | |||| | ||| ||||| |||||||||| || Sbjct 6163570 CGAAATTCCCTTTCTTTGGGATCTTTTATGTAAGTGTCAATAAGGAAACTATACATTCCA 6163629 Query 21779 GAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATTGA 21838 |||||||| ||||| || || || || || || | ||||| | || |||| ||| Sbjct 6163630 GAATGTATGTTTTCCATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCACCTGA 6163689 Query 21839 ACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAAAA 21898 || || | |||| | |||||||| |||||||||| |||||||| || ||||| Sbjct 6163690 ACTTCTTGGCTACATCGCTCCACCAAGTTTGCATTTACTATGCCATCACTTGC-GCAAAG 6163748 Query 21899 AATGCCAATATATTTTTTATAAAATATC 21926 || ||| | || ||||||||||| Sbjct 6163749 AAAACCAGAACATGGGATATAAAATATC 6163776 >seq5558 Length=22633747 Score = 98.7 bits (108), Expect = 1e-15 Identities = 124/169 (73%), Gaps = 1/169 (1%) Strand=Plus/Minus Query 21100 TTTATTCAGCTTTATAAAAATAT-TTATTTAAAAATCAGCATCTAATGAGAAAACATTAT 21158 ||||| || |||| || || | || |||||||||| ||||| || | ||| || |||| Sbjct 15364148 TTTATAGAGTTTTAAAACAAGAGGTTTTTTAAAAATCTGCATCCAAGGTGAAGACGTTAT 15364089 Query 21159 CTTCtttttttGACATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAAT 21218 || ||| || ||||| | | | ||||| || ||||| ||| || || |||| Sbjct 15364088 CTGTGGTTTCTGCCATAACTGCAAAACGCTGATACTCCGAAACTCGTTTCTCAAAGAAAT 15364029 Query 21219 TTGTCTTTCCTTCCAATGATATAGATTCCATAAAATCAAATGGATTTTC 21267 |||| |||||||| || || || ||||||||||||||| |||||||| Sbjct 15364028 TTGTTTTTCCTTCTAAAGAAATGTTTTCCATAAAATCAAAAGGATTTTC 15363980 >seq237 Length=7777549 Score = 89.7 bits (98), Expect = 5e-13 Identities = 291/455 (64%), Gaps = 3/455 (1%) Strand=Plus/Plus Query 21476 CATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAA 21535 || ||||| | ||| || ||||| ||||| || || || | |||||| |||||||| | Sbjct 5488340 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 5488399 Query 21536 CCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAA 21595 || ||||| | |||| || || | ||| ||||| ||||| | || |||||||| Sbjct 5488400 CCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGAAG 5488459 Query 21596 ATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAAT 21655 ||| || || ||||| || | | ||||| || | ||| ||||| | | Sbjct 5488460 GTGCTTTCCACTAGGGCAAAGGCTGCAACACGTTCTCCATGGGTAACGTCTTTGTTCCCA 5488519 Query 21656 ATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTT 21715 ||||| |||| |||||| | || | ||| || |||| |||| || || Sbjct 5488520 ATCCAACACAAGACCCAAACTGCCTTCTTCTTGACACAGGCA-TTGTTCCAATGGCATTG 5488578 Query 21716 AAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATT 21775 || ||| | |||| | ||| | ||| ||||| || Sbjct 5488579 AAGAGAAATTCCCTTTCTTTGTTATCTTTAATGTGTGTCAATAAGGAG--ACTATTTATG 5488636 Query 21776 TCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACAT 21835 ||||||||||| |||||| | || || || || || || || || | |||| | Sbjct 5488637 TCAGAATGTATGTTTTCTGTAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCTGTAATC 5488696 Query 21836 TGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCA 21895 |||| || | |||| ||| |||||||||||| |||||| ||||||| || ||| Sbjct 5488697 TGAATTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTACTATCCCATCACATGCTGCA 5488756 Query 21896 AAAAATGCCAATATATTTTTTATAAAATATCGTTC 21930 || || |||| |||| ||||||||||| ||| Sbjct 5488757 AAGAAAGCCAGAATATAGGATATAAAATATCTTTC 5488791 >seq337 Length=12475526 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 21122 TTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCC 21181 || ||||| || |||||||| || | ||| ||| ||| | ||||||| | |||| Sbjct 7488100 TTCATTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCCC 7488159 Query 21182 ATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATA 21241 || | ||||| || | ||||| || || || || || ||||||||||||| ||| ||| Sbjct 7488160 ATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATA 7488219 Query 21242 GATTCCATAAAATCAAATGGATTTTC 21267 |||||||| |||||||| || || Sbjct 7488220 TTCTCCATAAAGTCAAATGGGTTCTC 7488245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531836087618920