Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20nemestrina_20[refseq_20GCF_5F000956065.1_202015-03-19] 9,733 sequences; 2,948,703,511 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq37 325 5e-84 seq237 201 1e-46 seq9297 116 5e-21 seq3224 114 2e-20 seq337 114 2e-20 seq9224 95.1 2e-14 seq1336 95.1 2e-14 seq170 84.2 3e-11 >seq37 Length=10148950 Score = 325 bits (360), Expect = 5e-84 Identities = 639/938 (68%), Gaps = 25/938 (3%) Strand=Plus/Plus Query 32957 TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTT 33013 |||| |||||| |||| || | |||| ||| ||| | || |||| |||||||| Sbjct 6162987 TTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGATTCGACACCACTCCCATCC 6163046 Query 33014 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTT 33073 | || || || || | || || || || || || |||| | ||| ||||| | Sbjct 6163047 TCTGATACTCCTTTACTCTCTTCTCAAAGAAGTTCGTCTTTC-----AGTGAAATATTCT 6163101 Query 33074 CCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCA 33133 |||| || ||||| || || || | ||| || |||| |||| ||| | || Sbjct 6163102 CCATAAAGTCAAATGGGTTCTCTACTCTGAAAACCTTGCTAAAACCCAGTTCCGGCATG- 6163160 Query 33134 ATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTT 33193 ||| || || || || || || ||| ||||| | |||||||| || || || | Sbjct 6163161 -TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCT 6163219 Query 33194 TAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAG 33253 | || || | ||| |||| || ||||| ||||| || || |||| | || | Sbjct 6163220 TCACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCATTGATAATTCTTT 6163279 Query 33254 ATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAAAT 33313 ||| | | || || ||| || | | || || ||||||| || || |||| Sbjct 6163280 CTCTTATTCTCTCCTCCAATGGTTTGTGTACCAGGTGATTGAACATCAGGCAAGCAAAAT 6163339 Query 33314 CGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTA 33373 | ||||| | |||||| |||| |||||| ||||| |||||||| ||||| || ||||| | Sbjct 6163340 CACAGTGTAAACCCTCATCTCCACTAATAAGTTCATTGGAAAAGGTGAGGCCAGGCATCA 6163399 Query 33374 GGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTA 33433 | || || || || ||||| ||||| || || || | |||||||||| | ||||| Sbjct 6163400 GTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAGATG---CCTTCCG 6163456 Query 33434 CTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGTATCCACTTTT 33490 ||||||||||| | | || | || ||||| | | || |||| ||||| | Sbjct 6163457 CTGCAGCAAAGACTACAACACGTTCCCCATAGGTAGCTGCTTTGTCCCCAATCCAGTGCA 6163516 Query 33491 GAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGt 33550 |||||||| |||||||| || ||||||||||||||||| |||||||| ||| || | | Sbjct 6163517 AGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGCGAAATT 6163576 Query 33551 ttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAA 33610 |||| || |||||| | ||||| || || | | |||||||||| | ||||| | Sbjct 6163577 CCCTTTCTTTGGGATCTTTTATGTAAGTGTCAATAAGGAAACTATACATTCCAGAATGTA 6163636 Query 33611 TGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTG 33670 ||||||| ||||| || || || || ||||||| | || || || | ||| |||||| Sbjct 6163637 TGTTTTCCATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCACCTGAACTTCTT 6163696 Query 33671 TACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCA 33730 | | |||| ||| |||| ||| |||| ||||| || ||||| || ||||| || ||| Sbjct 6163697 GGCTACATCGCTCCACCAAGTTTGCATTTACTATGCCATCACTTGC-GCAAAGAAAACCA 6163755 Query 33731 ATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTG----ATA 33786 ||||| |||||||||| | || || || | || ||||| || || || Sbjct 6163756 GAACATGGGATATAAAATATCTCTCCTCGGGCTTCAG-GAATTCC---CAGTGCCAAATG 6163811 Query 33787 TCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATG 33846 || || || || || || || | ||||| || || || || ||||| |||||||| Sbjct 6163812 TCCTTGGACGGGTCCACCTCCTCGGCGGTCCAGAAGGAAGCTTCCGCCTTCTTATACATC 6163871 Query 33847 TTCCAGATGTCATAATATTGGATTGGGAAAATAACAAA 33884 | |||||| |||| || | ||| ||||| || ||||| Sbjct 6163872 TGCCAGATATCATGGTACTCGATGGGGAAGATGACAAA 6163909 >seq237 Length=7777549 Score = 201 bits (222), Expect = 1e-46 Identities = 318/450 (71%), Gaps = 8/450 (2%) Strand=Plus/Plus Query 33316 CAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGG 33375 ||||| | |||||| || || ||||| ||||| |||||||| ||||| || ||||| || Sbjct 5488352 CAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGT 5488411 Query 33376 CCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACT 33435 || | || || ||||| ||||| || || || |||||||||||| | | ||| ||| Sbjct 5488412 CCTTGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGAAGGTGCTTTCCACT 5488471 Query 33436 GCAGCAAAGGCAATAAGTCTCTCTCCAT---AACCGGCGCTGTCATGTATCC-ACTTTTG 33491 |||||||| || | ||||||| | || | ||| |||| || | Sbjct 5488472 AGGGCAAAGGCTGCAACACGTTCTCCATGGGTAACGTCTTTGTTCCCAATCCAACACAAG 5488531 Query 33492 AGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtt 33551 | ||||| | |||||||| || |||| |||||| ||| | |||||||| |||||| | | Sbjct 5488532 A-CCCAAACTGCCTTCTTCTTGACAC-AGGCATTGTTCCAATGGCATTGAAGAGAAATTC 5488589 Query 33552 tttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAAT 33611 |||| || |||||||| || || || || | ||||||| || || ||||| || Sbjct 5488590 CCTTTCTTTGTTATCTTTA--ATGTGTGTCAATAAGGAGACTATTTATGTCAGAATGTAT 5488647 Query 33612 GTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGT 33671 |||||| | || || || || || ||||| || | || |||||||| | |||| Sbjct 5488648 GTTTTCTGTAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCTGTAATCTGAATTTCTTG 5488707 Query 33672 ACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAA 33731 | |||| ||||| |||| ||||||| ||||| || |||| |||||||| || |||| Sbjct 5488708 AACAAATTGTTCCACCAAGTTTTCATCTACTATCCCATCACATGCTGCAAAGAAAGCCAG 5488767 Query 33732 TACATGTTTTATAAAATATTTTTCGTCTGG 33761 | || |||||||||| |||| || || Sbjct 5488768 AATATAGGATATAAAATATCTTTCCTCAGG 5488797 >seq9297 Length=17183 Score = 116 bits (128), Expect = 5e-21 Identities = 97/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 33328 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33387 || ||||| || || ||||| |||||||| |||||||| ||||| || || | ||| || Sbjct 1697 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCTTT 1638 Query 33388 AGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33446 ||||| ||||| | ||| || ||||| || ||||| ||||||||||| ||||||||||| Sbjct 1637 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 1579 >seq3224 Length=21299586 Score = 114 bits (126), Expect = 2e-20 Identities = 128/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 62062 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62121 |||| ||||| || |||||||| || |||||| ||| | || || || || ||||||| Sbjct 2303265 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATAT 2303324 Query 62122 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62181 ||| |||||| |||||||| ||||| || || || || || ||||| || | | || | Sbjct 2303325 TCAAAGATTGGCTTTGATCAATGAAAGCACCTCTCTCAGCTGCCATCTTGAGAACGGTTT 2303384 Query 62182 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62232 | || | |||||||| | ||||||||||| | |||| | || || |||| Sbjct 2303385 TCTGAGAGATTTCCCACACAGTTTTATAAAGTTGCTTCAGGTCATCAGGAA 2303435 Score = 107 bits (118), Expect = 2e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396 || ||||||||||| ||||| ||||| ||||| || || || ||||| || ||||| | Sbjct 2306112 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATG 2306171 Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62456 ||||||||||| |||| || |||||||| || || || ||||| || || | | |||| Sbjct 2306172 GACTCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAA 2306231 Query 62457 CTATTTCTAAGACCGTA 62473 || ||||| | ||| || Sbjct 2306232 CTGTTTCTTATACCATA 2306248 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 63216 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT 63275 ||||||||||| |||||||| |||||||||||||| | || |||||||||| | || Sbjct 2317668 ACTCGTTTCATGAAGAGATCCGGAATCCAAAGAGCAAAGAAAAGATCTCTGGCACGCTGC 2317727 Query 63276 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 63335 ||||| |||||||| ||||| || | ||| ||||| | | || || ||||||| || Sbjct 2317728 TCCTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCAAGGC 2317787 Query 63336 TCCAAGTATATGGC 63349 |||| ||| || || Sbjct 2317788 TCCAGGTAAATAGC 2317801 >seq337 Length=12475526 Score = 114 bits (126), Expect = 2e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| ||||| || || ||||| |||||||| ||||| || ||||| || || || || | Sbjct 7490257 CCTCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 7490316 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| ||||| || || || || || ||||||||||| ||||| ||||||||||||| Sbjct 7490317 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 7490376 Query 33446 C 33446 | Sbjct 7490377 C 7490377 Score = 102 bits (112), Expect = 1e-16 Identities = 97/124 (78%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 33564 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33623 |||||| | ||||| || || | ||||||||||||||| ||||| |||||||| ||||| Sbjct 7492360 ATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGC 7492419 Query 33624 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33683 || || || || |||||||| | || || |||||||| |||||| | |||||| || Sbjct 7492420 AATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 7492479 Query 33684 CGCC 33687 | || Sbjct 7492480 CACC 7492483 >seq9224 Length=17174830 Score = 95.1 bits (104), Expect = 2e-14 Identities = 151/216 (70%), Gaps = 3/216 (1%) Strand=Plus/Plus Query 31086 ATCTAGAGATTGTACTTCTTCCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGC 31145 ||| | || ||| |||||||| | |||||||||| | || |||| | || || || || Sbjct 3229329 ATCCAAAGCTTGAACTTCTTCTATTTCTGGATAAAAAATCCGTTCGCAAATGAGTTGTGC 3229388 Query 31146 TATTCTATCTCCAGTATTTACATTAAACGTACATTTTCCATTATTAATAAGAATGACTCC 31205 |||| ||| || | || || | |||| | ||| ||| ||||| || | || || Sbjct 3229389 AATTCGATCACCCTTTTTGACTTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACC 3229448 Query 31206 TATGTTTCCCCTATAATCTTCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAG 31262 | ||||| ||||||||||| | ||| ||||| |||||| |||||| | |||| Sbjct 3229449 AACATTTCCTCTATAATCTTCATTTATGACACCAGCTCCTACATCAATAAAGTGTTTTGC 3229508 Query 31263 GGACAGACCAGACCTAGGAGCTATTCTACCATAGCA 31298 | || || |||| ||||||| ||| ||||| || Sbjct 3229509 AGCCAAGCCTGACCGTGGAGCTACTCTTCCATAACA 3229544 >seq1336 Length=15368434 Score = 95.1 bits (104), Expect = 2e-14 Identities = 177/255 (69%), Gaps = 9/255 (4%) Strand=Plus/Plus Query 31047 TCCTGTTGATCCAAACCCT--TGATCTCCTCTATTTGTACTATCTAGAGATTGTACTTCT 31104 ||| || || ||||| ||| ||| | ||| | ||| ||| | || ||| |||||| Sbjct 3172634 TCCAGTAGAACCAAAACCTCCTGAACCCCTTTTGGTGTC--ATCCAAAGCTTGAACTTCT 3172691 Query 31105 TCCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCAGTATTT 31164 || | ||||||||| | || |||| | | || ||||| || |||| ||| | ||||| Sbjct 3172692 TCTATTTCTGGATAGAACATCCGTTCACAAATGAGCTGTGCAATTCGATCACGT-TATTT 3172750 Query 31165 -ACATTAAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATC 31223 || | |||| | ||| ||| ||||| | | || || || ||||| |||||||| Sbjct 3172751 GACTTCAAACTTTTCTTTGCCAAAATTAAAGACTACAACACCAATATTTCCTCTATAATC 3172810 Query 31224 TTCGTCTATTACACCGCCTCCTATAT---CAATGCCTTTTAGGGACAGACCAGACCTAGG 31280 ||| ||| | ||||| |||||| || ||| | |||| | || ||||||| || Sbjct 3172811 TTCATCTGTGACACCAGCTCCTACATCTACAACGTGTTTTGCAGCCAAGCCAGACCGTGG 3172870 Query 31281 AGCTATTCTACCATA 31295 ||||| ||| ||||| Sbjct 3172871 AGCTACTCTTCCATA 3172885 >seq170 Length=10713981 Score = 84.2 bits (92), Expect = 3e-11 Identities = 145/209 (69%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 31047 TCCTGTTGATCCAAACCCT--TGATCTCCTCTATTTGTACTATCTAGAGATTGTACTTCT 31104 ||| || || ||||| ||| ||| | ||| | ||| ||| | || ||| |||||| Sbjct 2521879 TCCAGTGGAACCAAAACCTCCTGAACCCCTTTCCGTGTC--ATCCAAAGCTTGAACTTCT 2521822 Query 31105 TCCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCAGTATTT 31164 || | |||||||||| | || |||| | || ||||| || |||| ||| | | || Sbjct 2521821 TCTATTTCTGGATAAAAAATCCGTTCGCAAATGAGCTGTGCAATTCGATCACACTTTTTG 2521762 Query 31165 ACATTAAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCT 31224 || | |||| | ||| ||| |||| || | | || | ||||| ||||||||| Sbjct 2521761 ACTTCAAACTTTTCTTTGCCAAAGTTAAACAGTACACCACCAACATTTCCTCTATAATCT 2521702 Query 31225 TCGTCTATTACACCGCCTCCTATATCAAT 31253 || ||||| ||||| |||||| |||||| Sbjct 2521701 TCATCTATGACACCAGCTCCTACATCAAT 2521673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622871410686280