Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20nemestrina_20[refseq_20GCF_5F000956065.1_202015-03-19] 9,733 sequences; 2,948,703,511 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq758 100 2e-16 seq7002 95.1 1e-14 seq5557 87.8 1e-12 seq3 86.0 5e-12 seq7446 82.4 6e-11 >seq758 Length=2790677 Score = 100 bits (110), Expect = 2e-16 Identities = 153/215 (71%), Gaps = 5/215 (2%) Strand=Plus/Minus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| ||||| || |||||||| || ||||||||||| | | || | | || Sbjct 2565656 CAGGACCAGGTGCAGGGTTGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATC 2565597 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 |||| || ||||| ||| | || |||| ||| ||||| || | ||| ||||| || Sbjct 2565596 TTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCTTCTTTATC 2565537 Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 || || || |||||| | | | ||||| | ||||||| |||| ||||||| Sbjct 2565536 CTGGATCTTGGC--CTTCACATTTTCGATGGTGTCACTGGGCTCC-ACTCCAGGGTGATG 2565480 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || |||||||| ||||| || || |||||||| Sbjct 2565479 GTCTTGCCGGTCAGGGTTTTCACGAAGATCTGCAT 2565445 Score = 87.8 bits (96), Expect = 1e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 16734 GCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGTT 16793 |||| || ||||| || || ||||||||||| | | || | | || |||| || | Sbjct 2565189 GCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCT 2565130 Query 16794 TGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGCT 16853 |||| ||| | || |||| ||| ||||| || | ||| || || || |||| Sbjct 2565129 TGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTATCCTGGATTTTGG 2565070 Query 16854 GCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTCA 16913 |||||| | | | ||||| | ||||||| || | ||||||||| || ||||||| Sbjct 2565069 CCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTTGCCGGTCA 2565010 Query 16914 GCGTTTTGACAAAAATCTGCATTTTG 16939 | || || || || |||||||||||| Sbjct 2565009 GGGTCTTCACGAAGATCTGCATTTTG 2564984 >seq7002 Length=12659153 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/232 (70%), Gaps = 5/232 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || ||||| || | || |||| ||||| |||||||| || || ||||||||||| | Sbjct 9467041 CCACCTCGCAGGCGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAG 9467100 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || |||| |||||||| ||| | || || ||||| ||||| || Sbjct 9467101 AGAGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGG 9467160 Query 16829 ACGCCCTCTTTGTCGGCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| ||||| ||||| ||| || || | | || ||||| | |||||| Sbjct 9467161 ATACCCTCCTTGTCTTGAATTTTGGCT--TTGACAT-TCTCATGGTGTCACTGGGCTCGA 9467217 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 | | |||||||||||| || || || || || ||||| |||||||| || Sbjct 9467218 CCTTGAGGGTGATGGTTTTGCCCGTGAGGGTCTTCACAAAGATCTGCATGTT 9467269 >seq5557 Length=63123227 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 ||||| ||||||| || || |||||| |||| | | || | | ||||||| ||| Sbjct 51838190 TGCAGGATGGACTCTTTCTGGATGTTGCAGTCTGAGAGAGTGCGGCCATCCTCCAGCTGT 51838249 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 ||||||||| | || || ||||| ||||| | || | |||||| ||| | ||||| Sbjct 51838250 TTGCCCGCAAATATCAGACGCTGCTGGTCAAGTGGGATGCCCTCCTTGGCTTGAATTTTG 51838309 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 ||| || | | ||||| | |||||| || | ||||||||| || || || Sbjct 51838310 GCCTTGACATTCTCAGTGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCTGTG 51838369 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 || || || ||||| |||||||| Sbjct 51838370 AGGGTCTTCACAAAGATCTGCAT 51838392 >seq3 Length=16319837 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/214 (70%), Gaps = 6/214 (3%) Strand=Plus/Minus Query 16727 ACCATA--TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCT 16784 |||||| ||||| |||||||| || || ||||||||||| | || ||| | || | Sbjct 4626402 ACCATAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTT 4626343 Query 16785 CCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC-- 16842 ||| || || || ||| | || |||| ||| ||||| ||| | ||| || || || Sbjct 4626342 CCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTTATCTT 4626283 Query 16843 GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGT 16902 || ||||| ||| || | | | ||||| | |||||| || | ||||||||| Sbjct 4626282 GGATCTTTGC--CTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGT 4626225 Query 16903 TTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 || || ||||| || || || || ||||||||| Sbjct 4626224 CTTGCCAGTCAGGGTCTTCACGAAGATCTGCATT 4626191 >seq7446 Length=17224310 Score = 82.4 bits (90), Expect = 6e-11 Identities = 159/232 (69%), Gaps = 7/232 (3%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || ||||| || | || |||| ||||| |||||||| ||| ||||||||||| | Sbjct 13346887 CCACCTCGCAGGCGCAACACCAGGTGCAGGGTGGACTC---TTGGATGTTGTAGTCTGAG 13346943 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || |||| ||||||| ||| | || || ||||| ||||| || Sbjct 13346944 AGAGTGCGGCCATCTTCCAGCTGTTTGCTGGCAAATATCAGACGCTGCTGGTCAGGTGGG 13347003 Query 16829 ACGCCCTCTTTGTCGGCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| ||||| ||||| ||| || || | | | ||||| | |||||| Sbjct 13347004 ATACCCTCCTTGTCTTGAATTTTGGCT--TTGACGTTCTCAATGGTGTCACTGGGCTCGA 13347061 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 || | |||||||||||| || | || || || ||||| |||||||| || Sbjct 13347062 CCTCAAGGGTGATGGTTTTGCCCGGGAGGGTCTTCACAAAGATCTGCATGTT 13347113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405039948081670