Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20nemestrina_20[refseq_20GCF_5F000956065.1_202015-03-19] 9,733 sequences; 2,948,703,511 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq9002 127 1e-24 seq225 123 2e-23 seq1336 122 6e-23 seq226 116 2e-21 seq1670 113 3e-20 seq9446 109 4e-19 seq6668 102 5e-17 seq5446 96.9 2e-15 seq1381 89.7 3e-13 seq1780 87.8 1e-12 seq758 86.0 4e-12 seq7002 84.2 1e-11 seq1080 82.4 5e-11 >seq9002 Length=6500712 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 4150660 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 4150601 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 4150600 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 4150566 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||| Sbjct 4147484 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCAGTCTCGT 4147425 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 4147424 GCCGGTATTTAGCCTTA 4147408 >seq225 Length=41818005 Score = 123 bits (136), Expect = 2e-23 Identities = 83/93 (89%), Gaps = 5/93 (5%) Strand=Plus/Plus Query 25904 GCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTA 25958 ||||||||||||||||||||||||||| |||||||| ||||| || ||||||||| Sbjct 21933335 GCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGTTC 21933394 Query 25959 ATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||| |||||||||||||||||||||||||||| Sbjct 21933395 ATCCATTCATGCGCGTCACTAATTAGATGACGA 21933427 >seq1336 Length=15368434 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||| ||||||||||||||||||| ||| |||||||||||||| || |||||||| Sbjct 7132297 AAGCCAGTTCCCTTGGCTGTGGTTTTGCTGGATAGTAGATAGGGACAGTGGGAATCTCGT 7132238 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 7132237 TTATCCATTCATGCGCGTCACTAATTAGATGACGA 7132203 >seq226 Length=6241193 Score = 116 bits (128), Expect = 2e-21 Identities = 79/89 (89%), Gaps = 5/89 (6%) Strand=Plus/Plus Query 25908 GTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCC 25962 ||||||||||||||||||||||| |||||||| ||||| || ||||||||| |||| Sbjct 934133 GTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCC 934192 Query 25963 TTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||||||||||||||||||||||||| Sbjct 934193 ATTCATGCGCGTCACTAATTAGATGACGA 934221 >seq1670 Length=4706099 Score = 113 bits (124), Expect = 3e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | ||||||||| |||||||||||||||||| ||||||||| |||| | || Sbjct 2974236 CAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATC 2974177 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | || || || ||||| || || | ||| ||||| | || | ||||| || || Sbjct 2974176 TTCCAGGTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 2974117 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || ||| ||||| | | ||||| |||||| || | || || || Sbjct 2974116 CTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTGATGGT 2974057 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCA 38316 || ||||| | |||||||||||| ||||||| Sbjct 2974056 CTTCCCCGTGAGGGTTTTCACGAAAATCTGCA 2974025 >seq9446 Length=14842378 Score = 109 bits (120), Expect = 4e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | ||||||||| |||||||||||||||||| ||||||||| |||| | || Sbjct 8610017 CAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATC 8609958 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | ||| || || ||||| || || | ||| || | | || | ||||| || || Sbjct 8609957 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCAGAGCAGGAGGAATTCCTTCCTTCTC 8609898 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCA-CTTTCAACTTCTAATGTAATAG 38283 | || || ||| ||||| | | |||| || | |||||| || | || || | Sbjct 8609897 CTGGATCTTGGCCTTTACATTTTCTATCGTAT-TCGAGGGTTCAACCTCGAGGGTGATGG 8609839 Query 38284 TTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 | || ||||| | |||||||||||| |||||||| || Sbjct 8609838 TCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 8609802 >seq6668 Length=25972781 Score = 102 bits (112), Expect = 5e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 ||||| | |||||| || |||||||||||| ||| | ||||||||| |||| |||| Sbjct 3822660 CAACAAAAGATGAAGGGTAGGCTCCTTTTGAATGTTGCAGTCAGACAAAGTACGTCCGTC 3822601 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | ||| | || ||||| || || | ||| ||||| | || | ||||| || || Sbjct 3822600 TTCCAGTTGCTCGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 3822541 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || ||| ||||| | | |||||| ||||| || | || ||||| Sbjct 3822540 CTGGATCTTGGCCTTTACATTTTCTGCCGTATCTGAGGGTTCAATCTCAAGGGTGATAGT 3822481 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || ||| | | |||||||||||| |||||||| || Sbjct 3822480 CTTCCCCCTTAGGGTTTTCACGAAAATCTGCATTTT 3822445 Score = 95.1 bits (104), Expect = 8e-15 Identities = 79/95 (83%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG---GGTA--ATCTCGT 25956 ||||| ||||||||||||||||||||||| |||||||| ||||| || ||||| | Sbjct 14549140 AAGCCTGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACACCTACTATCTCAT 14549199 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||| |||||||||||| ||| || Sbjct 14549200 TCATCCATTCATGCGAGTCACTAATTAGTTGAGGA 14549234 >seq5446 Length=20287406 Score = 96.9 bits (106), Expect = 2e-15 Identities = 81/96 (84%), Gaps = 9/96 (9%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATA--GTAGATAGG----GGGTAATCTCG 25955 |||||||||||||||||||||| |||||| |||| |||| |||| | | ||||||| Sbjct 17764085 AAGCCCGTTCCCTTGGCTGTGG-TTCGCTGGATAGTGTAGGTAGGGACAGTGGAATCTCG 17764143 Query 25956 TTAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 || |||| ||||| ||||||||||||||||||||| Sbjct 17764144 TTTATCCCTTCAT--GCGTCACTAATTAGATGACGA 17764177 Score = 95.1 bits (104), Expect = 8e-15 Identities = 78/95 (82%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 || || ||||||||||||||||||| ||| |||| ||| ||||| || |||||||| Sbjct 19028755 AAACCTGTTCCCTTGGCTGTGGTTTTGCTGGATATTAGGTAGGGACAGTGGGAATCTCGT 19028814 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||||| |||||||||||||||| || Sbjct 19028815 TCATCCATTCATGCATGTCACTAATTAGATGATGA 19028849 >seq1381 Length=4269996 Score = 89.7 bits (98), Expect = 3e-13 Identities = 64/74 (86%), Gaps = 5/74 (7%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 3766920 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 3766979 Query 25957 TAATCCTTTCATGC 25970 | |||| ||||||| Sbjct 3766980 TCATCCATTCATGC 3766993 >seq1780 Length=18395747 Score = 87.8 bits (96), Expect = 1e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19948 TCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCG 20007 ||||||||||||||||||||||||||||||| | ||||| |||| |||| |||||| || Sbjct 14554201 TCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTATGGTACGTGTTGACTATTGGTCTCACG 14554142 Query 20008 GTAATATTTAGCCTTA 20023 | ||||||||| || Sbjct 14554141 CCAGTATTTAGCCATA 14554126 >seq758 Length=2790677 Score = 86.0 bits (94), Expect = 4e-12 Identities = 156/227 (69%), Gaps = 1/227 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| |||| |||| |||| || || || |||||| || || ||||| ||||| Sbjct 2565670 CCACCCCTCAGGCGCAGGACCAGGTGCAGGGTTGACTCCTTCTGGATGTTGTAGTCAGAA 2565611 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | || | || || | || || || ||||| || || | || || |||| |||| Sbjct 2565610 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGG 2565551 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||||||| ||| || || ||||||||| | || || || | || ||| Sbjct 2565550 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACT 2565491 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | | || || || || || |||| |||||||||||| |||||||| Sbjct 2565490 CC-AGGGTGATGGTCTTGCCGGTCAGGGTTTTCACGAAGATCTGCAT 2565445 >seq7002 Length=12659153 Score = 84.2 bits (92), Expect = 1e-11 Identities = 158/231 (68%), Gaps = 1/231 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||||| || |||||||||| || || ||| ||| || || || ||||| || || Sbjct 9467041 CCACCTCGCAGGCGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAG 9467100 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | || | || || | ||||| ||||||||||| || || || || || | ||| Sbjct 9467101 AGAGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGG 9467160 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | || || ||||| |||||| || ||||||| | || || | || || Sbjct 9467161 ATACCCTCCTTGTCTTGAATTTTGGCTTTGACATTCT-CATGGTGTCACTGGGCTCGACC 9467219 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 | | || || ||||| ||||| | ||| ||||| || |||||||||||| Sbjct 9467220 TTGAGGGTGATGGTTTTGCCCGTGAGGGTCTTCACAAAGATCTGCATGTTT 9467270 >seq1080 Length=1940247 Score = 82.4 bits (90), Expect = 5e-11 Identities = 72/88 (82%), Gaps = 5/88 (6%) Strand=Plus/Minus Query 25909 TTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGG--GT---AATCTCGTTAATCCT 25963 |||| |||||||||||||| || ||||| || ||||| || ||||||||| |||| Sbjct 425822 TTCCTTTGGCTGTGGTTTCACTGGATAGCAGGTAGGGACAGTGAGAATCTCGTTCATCCA 425763 Query 25964 TTCATGCGCGTCACTAATTAGATGACGA 25991 ||||| ||| ||||||||||||||| || Sbjct 425762 TTCATACGCCTCACTAATTAGATGAGGA 425735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334907468249123