Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20nemestrina_20[refseq_20GCF_5F000956065.1_202015-03-19] 9,733 sequences; 2,948,703,511 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq7002 109 5e-19 seq7446 91.5 1e-13 >seq7002 Length=12659153 Score = 109 bits (120), Expect = 5e-19 Identities = 155/214 (72%), Gaps = 7/214 (3%) Strand=Plus/Minus Query 24991 ACGGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGG 25050 ||| || ||||| || ||||| ||||| | || || ||| ||||||| || | || | Sbjct 9467274 ACGCAAACATGCAGATCTTTGTGAAGACCCTCACGGGCAAAACCATCACCCTCAAGGTCG 9467215 Query 25051 AGTCGTCTGACACTATC-GA--GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTC 25107 || | |||||| || || |||| |||| |||| ||| ||||| || || || | Sbjct 9467214 AGCCCAGTGACACCATGAGAATGTCA---AAGCCAAAATTCAA-GACAAGGAGGGTATCC 9467159 Query 25108 CACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGG 25167 |||||||||| ||||| | || |||||||||||||| | ||||||| |||||| | Sbjct 9467158 CACCTGACCAGCAGCGTCTGATATTTGCCGGCAAACAGCTGGAAGATGGCCGCACTCTCT 9467099 Query 25168 GCGATTACAATATTCAAAAAGAATCCACGCTACA 25201 || ||||| || || ||||| ||||| || || Sbjct 9467098 CAGACTACAACATCCAGAAAGAGTCCACCCTGCA 9467065 >seq7446 Length=17224310 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/215 (70%), Gaps = 11/215 (5%) Strand=Plus/Minus Query 24991 ACGGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGG 25050 ||| || ||||| || ||||| ||||| | | || ||| ||||||| | || || | Sbjct 13347118 ACGCAAACATGCAGATCTTTGTGAAGACCCTCCCGGGCAAAACCATCACCCTTGAGGTCG 13347059 Query 25051 AGTCGTCTGACACTATCGAG----TCACTGAAGCAAAAAATCACTGACAAAGAAGGGATT 25106 || | |||||| || ||| ||| |||| |||| ||| ||||| || || || Sbjct 13347058 AGCCCAGTGACACCATTGAGAACGTCA---AAGCCAAAATTCAA-GACAAGGAGGGTATC 13347003 Query 25107 CCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTG 25166 ||||||||||| ||||| | || |||||| ||||||| | ||||||| |||||| | Sbjct 13347002 CCACCTGACCAGCAGCGTCTGATATTTGCCAGCAAACAGCTGGAAGATGGCCGCACTCTC 13346943 Query 25167 GGCGATTACAATATTCAAAAAGAATCCACGCTACA 25201 || ||||| || | |||| ||||| || || Sbjct 13346942 TCAGACTACAACATCC---AAGAGTCCACCCTGCA 13346911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433276598226395