Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20nemestrina_20[refseq_20GCF_5F000956065.1_202015-03-19] 9,733 sequences; 2,948,703,511 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq37 248 1e-60 seq237 132 5e-26 seq337 96.9 4e-15 >seq37 Length=10148950 Score = 248 bits (274), Expect = 1e-60 Identities = 443/645 (69%), Gaps = 4/645 (1%) Strand=Plus/Plus Query 93061 TGGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTC 93120 |||||| ||||| | | |||| |||| | ||| ||||| || |||||||| || || Sbjct 6163299 TGGTTTGTGTACCAGGTGATTGAACATCAGGCAAGCAAAATCACAGTGTAAACCCTCATC 6163358 Query 93121 TCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCA 93180 || || | |||||| || || | || || | ||||||||||||||||||||| Sbjct 6163359 TCCACTAATAAGTTCATTGGAAAAGGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCA 6163418 Query 93181 AAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAAT 93240 ||||| || |||||| ||||||||| | | |||||| | || ||||| | |||| Sbjct 6163419 GAATATCGATGCAAAATAACCAGAAAAGA---TGCCTTCCGCTGCAGCAAAGACTACAAC 6163475 Query 93241 ACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTT 93300 |||||| || | | || | || | ||||| | || |||||||| || || || Sbjct 6163476 ACGTTCCCCATAGGTAGCTGCTTTGTCCCCAATCCAGTGCAAGGCCCAATCTGCCTTCTT 6163535 Query 93301 CTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCG 93360 ||| | |||||| | ||||| || || || || | | || | || | | |||| Sbjct 6163536 CTTGACACAAGGCATCGTTTCAATGGCATTGAAGCGAAATTCCCTTTCTTTGGGATCTTT 6163595 Query 93361 TATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTG 93420 |||||| || || || | | | ||||||| ||||||| | || ||||| |||||||| Sbjct 6163596 TATGTAAGTGTCAATAAGGAAACTATACATTCCAGAATGTATGTTTTCCATGGCAATTTG 6163655 Query 93421 GAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAG 93480 ||| || ||||||| | ||||| || | ||| |||||||| | ||| ||| || | Sbjct 6163656 GAAGCCACAGAAACAGCGGGCTTCTGTCACCTGAACTTCTTGGCTACATCGCTCCACCAA 6163715 Query 93481 ATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATG 93540 ||| |||| ||||| ||||| ||| ||||| ||| ||| | ||| |||||||| Sbjct 6163716 GTTTGCATTTACTATGCCATCACTTGC-GCAAAGAAAACCAGAACATGGGATATAAAATA 6163774 Query 93541 TTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTC 93600 | |||| || || || ||||| | | | || || || | || || || || Sbjct 6163775 TCTCTCCTCGGGCTTCAGGAATTCCCAGTGCCAAATGTCCTTGGACGGGTCCACCTCCTC 6163834 Query 93601 GACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAAT 93660 | | ||||| || || ||||| || || || ||||| | ||| || || || || | || Sbjct 6163835 GGCGGTCCAGAAGGAAGCTTCCGCCTTCTTATACATCTGCCAGATATCATGGTACTCGAT 6163894 Query 93661 TGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAACGGCTC 93705 || || ||||||||||| ||||| ||| | || | |||||| Sbjct 6163895 GGGGAAGATGACAAAACGGCAGGGGTTTTCTCTCAGCAGCGGCTC 6163939 >seq237 Length=7777549 Score = 132 bits (146), Expect = 5e-26 Identities = 309/461 (67%), Gaps = 5/461 (1%) Strand=Plus/Plus Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACT-CATTGCTGAATGTTA 93149 ||| ||||||| |||||||| || || | || || || | ||||| ||||| | Sbjct 5488339 GCAAGCAAAGTAACAGTGTAAACCCTCATCAC-TGCTAATAAGTTCATTGGAAAATGTGA 5488397 Query 93150 AACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaa 93209 || || | ||||||| ||||||||||||| ||||| |||||| ||||||||| | Sbjct 5488398 GGCCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGA 5488457 Query 93210 aTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGC 93269 | | | |||||| ||||| || ||| |||||| || | || || | | Sbjct 5488458 AGGTGCTTTCCACTAGGGCAAAGGCTGCAACACGTTCTCCATGGGTAACGTCTTTGTTCC 5488517 Query 93270 TGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGT 93329 ||||| || ||||| | || || ||||| | ||| || | |||| | || || | Sbjct 5488518 CAATCCAACACAAGACCCAAACTGCCTTCTTCTTGACACA-GGCATTGTTCCAATGGCAT 5488576 Query 93330 TAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACA 93389 | || || | || | || | |||| |||| ||| | || | ||| || | Sbjct 5488577 TGAAGAGAAATTCCCTTTCTTTGTTATCTTTAATGTGTGT--CAATAAGGAGACTATTTA 5488634 Query 93390 TTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGA 93449 | |||||||| | || || | ||||||||||| || ||||| || | ||| || | Sbjct 5488635 TGTCAGAATGTATGTTTTCTGTAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCTGTAA 5488694 Query 93450 TCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTG 93509 |||| | ||||||| |||| || || | ||||||| ||||| ||||| |||||| Sbjct 5488695 TCTGAATTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTACTATCCCATCACATGCTG 5488754 Query 93510 CaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCA 93550 |||| ||||||| |||| |||||||| | | || ||| Sbjct 5488755 CAAAGAAAGCCAGAATATAGGATATAAAATATCTTTCCTCA 5488795 >seq337 Length=12475526 Score = 96.9 bits (106), Expect = 4e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 93134 TCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA 93193 |||||| ||||| | || || | ||||||||||||||||||||| ||||| || ||| Sbjct 7490277 TCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCA 7490336 Query 93194 AAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246 ||| ||| ||||| || || |||||||| || ||||| || || | |||||| Sbjct 7490337 AAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCTACGACACGTTC 7490389 Score = 96.9 bits (106), Expect = 4e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 93355 ATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGC 93414 |||| |||||| || || || | ||| ||||||||||||||| | || ||||| || Sbjct 7492360 ATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGC 7492419 Query 93415 AATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTC 93474 ||||||||| || |||||||| | ||||| || ||||| |||||||| ||||| ||| Sbjct 7492420 AATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 7492479 Query 93475 TAC 93477 || Sbjct 7492480 CAC 7492482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556793050922920