Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20nemestrina_20[refseq_20GCF_5F000956065.1_202015-03-19] 9,733 sequences; 2,948,703,511 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq7002 152 4e-32 seq7446 140 3e-28 seq547 129 5e-25 seq1299 125 6e-24 seq1470 120 3e-22 seq7292 105 6e-18 seq1226 100 2e-16 seq4780 91.5 1e-13 seq858 91.5 1e-13 seq1 82.4 6e-11 >seq7002 Length=12659153 Score = 152 bits (168), Expect = 4e-32 Identities = 173/231 (75%), Gaps = 1/231 (0%) Strand=Plus/Minus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||| ||||| || ||||| || || | || || ||||| |||| || | || || | Sbjct 9467270 AAACATGCAGATCTTTGTGAAGACCCTCACGGGCAAAACCATCACCCTCAAGGTCGAGCC 9467211 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 || || ||| || | || ||||| ||||||||||||||||||||||| ||||| || Sbjct 9467210 CAGTGACACCATG-AGAATGTCAAAGCCAAAATTCAAGACAAGGAGGGTATCCCACCTGA 9467152 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 || || ||||| |||||||||||||||||| | || ||| |||||| |||| || || Sbjct 9467151 CCAGCAGCGTCTGATATTTGCCGGCAAACAGCTGGAAGATGGCCGCACTCTCTCAGACTA 9467092 Query 22395 CAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 |||||| || ||||| |||||| | || | || ||||| |||| || || Sbjct 9467091 CAACATCCAGAAAGAGTCCACCCTGCACCTGGTGTTGCGCCTGCGAGGTGG 9467041 >seq7446 Length=17224310 Score = 140 bits (154), Expect = 3e-28 Identities = 170/231 (74%), Gaps = 3/231 (1%) Strand=Plus/Minus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||| ||||| || ||||| || || | | || ||||| |||| ||||| || || | Sbjct 13347114 AAACATGCAGATCTTTGTGAAGACCCTCCCGGGCAAAACCATCACCCTTGAGGTCGAGCC 13347055 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 || || ||| | || | ||||| ||||||||||||||||||||||| ||||| || Sbjct 13347054 CAGTGACACCATTGAGAACGTCAAAGCCAAAATTCAAGACAAGGAGGGTATCCCACCTGA 13346995 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 || || ||||| ||||||||| |||||||| | || ||| |||||| |||| || || Sbjct 13346994 CCAGCAGCGTCTGATATTTGCCAGCAAACAGCTGGAAGATGGCCGCACTCTCTCAGACTA 13346935 Query 22395 CAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 |||||| | |||| |||||| | || | || ||||| |||| || || Sbjct 13346934 CAACATCC---AAGAGTCCACCCTGCACCTGGTGTTGCGCCTGCGAGGTGG 13346887 >seq547 Length=9034655 Score = 129 bits (142), Expect = 5e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || ||||| || || | || || || || |||||||||| || | ||| Sbjct 8022646 AGATGCAGATCTTTGTGAAGACCCTTACGGGCAAGACCATCACTCTTGAGGTCAAGCCCA 8022705 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 || ||| || ||| ||||| ||||||||||||||||||||||| ||||| || | Sbjct 8022706 GTGACACCAATGAGGATGTCAAAGCCAAAATTCAAGACAAGGAGGGTATCCCACCTGACC 8022765 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || | ||| ||| |||||||||||||| | |||||| ||| || |||| || ||| Sbjct 8022766 AGCAGCATCTGATACTTGCCGGCAAACAGCTGGAGGATGGCCGAACTCTCTCAGACTACG 8022825 Query 22397 ACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 |||| |||| |||||| | || | || |||| |||| || || Sbjct 8022826 ACATCTGGGAAGAGTCCACCCTGCACCTGGTGCTGCGCCTGCGAGGTGG 8022874 >seq1299 Length=15376 Score = 125 bits (138), Expect = 6e-24 Identities = 151/204 (74%), Gaps = 1/204 (0%) Strand=Plus/Plus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || ||||| || || | || || || || |||| ||||| | || ||| Sbjct 1723 AGATGCAGATCTTTGTGAAGACCCTCACGGGCAAGACCATCACCCTTGAGATTGAGCCCA 1782 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGG-TATTCCACCCGAT 22335 || ||| | | || ||||| |||||||||||||||||||| ||| ||||| || Sbjct 1783 GTGACACCATTTAGAATGTCAAAGCCAAAATTCAAGACAAGGAGGGATATCCCACCTGAC 1842 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || ||||| ||| |||| || |||||| | |||||| |||||| |||| | ||| Sbjct 1843 CAGCAGCGTCTGATACTTGCTGGGAAACAGCTGGAGGATGGCCGCACTCTCTCAGGCTAC 1902 Query 22396 AACATTCAAAAAGAATCCACCATA 22419 ||||| || ||||| |||||| || Sbjct 1903 AACATCCAGAAAGAGTCCACCCTA 1926 >seq1470 Length=5179915 Score = 120 bits (132), Expect = 3e-22 Identities = 111/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 22292 ATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATAT 22351 || ||||| |||||||||||||| |||||||| ||||| || || || ||||| |||| Sbjct 4406738 ATTTCAAAGCCAAAATTCAAGACAAAGAGGGTATCCCACCTGACCAGCAGCGTCTGATAT 4406679 Query 22352 TTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAAT 22411 |||| ||||| ||| | |||||| | |||| |||| || |||||||| |||||| | | Sbjct 4406678 TTGCTGGCAAGCAGCTGGAGGATGGCTGCACTCTCTCAGACTACAACATCCAAAAACAGT 4406619 Query 22412 CCACCATACATTTAGTTTTGC 22432 ||||||| || | ||| ||| Sbjct 4406618 CCACCATGCACCTGGTTCTGC 4406598 >seq7292 Length=2378 Score = 105 bits (116), Expect = 6e-18 Identities = 91/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 |||||||||||||||||||| || ||||| || || || | ||| ||| |||| |||||| Sbjct 904 AAAATTCAAGACAAGGAGGGCATCCCACCTGACCAGCAGCATCTGATACTTGCGGGCAAA 963 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 ||| | |||||| | |||| |||| || |||||||| || ||||| ||||| Sbjct 964 CAGCTGGAGGATGGCTGCACTCTCTCAGACTACAACATCCAGAAAGAGTCCAC 1016 >seq1226 Length=1830524 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || | ||| || || | || || | ||| |||| |||| || | ||| Sbjct 1001238 ATGCAGATCTCTGTAAAGACCCTCACAGGAAGAACCATCACCTTTGAGGTCCAGCCCAGT 1001297 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| || || ||||| || || || ||||||||||| || ||||| || || Sbjct 1001298 GACACCAGTGAAAATGTCAAAGCCAAGATCCATGACAAGGAGGGCATCCCACCTGACCAG 1001357 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | ||| ||||||| ||||||||||| |||||| || ||| | || ||||| ||| Sbjct 1001358 CAGCATCTGATATTTGTGGGCAAACAGTTGGAGGATGGCCACACTCTTTCAGATTATAAC 1001417 Query 22399 ATTCAAAAAGAATCCACC 22416 || || ||||| |||||| Sbjct 1001418 ATCCAGAAAGAGTCCACC 1001435 >seq4780 Length=17887985 Score = 91.5 bits (100), Expect = 1e-13 Identities = 96/121 (79%), Gaps = 4/121 (3%) Strand=Plus/Plus Query 22303 AAAATTCAAGACAA-GGAGGG-TATTCCACCCGATCA-ACAACGTCTTATATTTGCCGGC 22359 |||||||||||||| |||||| ||| ||||| || || || ||||||||| |||| || Sbjct 9630415 AAAATTCAAGACAAGGGAGGGATATCCCACCTGACCAGGCAGCGTCTTATACTTGCTGGG 9630474 Query 22360 AAACAG-TTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCAT 22418 |||||| | |||||| |||||| |||| | |||||||| || ||||| |||||| | Sbjct 9630475 AAACAGCTGGGAGGATGGCCGCACTCTCTCAGGCTACAACATCCAGAAAGAGTCCACCCT 9630534 Query 22419 A 22419 | Sbjct 9630535 A 9630535 >seq858 Length=7346751 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/202 (71%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||| || ||||| || || | || || || || || | ||||| || || | | Sbjct 3074275 AGATGTGGATCTTTGTGAAGACCCTCACAGGCAAGACCATCGCCCTTGAGGTCGAGCCGA 3074216 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 || ||| || || |||| ||||||||||||||| |||| || | ||| || | Sbjct 3074215 GTGACACCACTGAGAATGCCAAAGCCAAAATTCAAGACAAGTAGGGCATCCTACCTGACC 3074156 Query 22337 AACAACGTCTTAT-ATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 | || |||| || ||||| |||||| || | |||||| |||||| |||| || ||| Sbjct 3074155 AGCAGTGTCTGATAATTTGAGGGCAAATAGCTGGAGGATGGCCGCACTCTCTCAGACTAC 3074096 Query 22396 AACATTCA-AAAAGAATCCACC 22416 ||||| || |||||| |||||| Sbjct 3074095 AACATCCAGAAAAGAGTCCACC 3074074 >seq1 Length=22034461 Score = 82.4 bits (90), Expect = 6e-11 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 22321 GGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGC 22380 ||||| ||||| || || || ||||| |||||||||||||||||| | || ||| |||| Sbjct 1467513 GGTATCCCACCTGACCAGCAGCGTCTGATATTTGCCGGCAAACAGCTGGAAGATGGCCGC 1467454 Query 22381 ACCGTCTCCGATTACAACATTCAAAAAG 22408 || |||| || |||||||| || |||| Sbjct 1467453 ACTCTCTCAGACTACAACATCCAGAAAG 1467426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419678211471145