Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20nemestrina_20[refseq_20GCF_5F000956065.1_202015-03-19] 9,733 sequences; 2,948,703,511 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq37 118 2e-21 seq9297 84.2 4e-11 seq337 84.2 4e-11 >seq37 Length=10148950 Score = 118 bits (130), Expect = 2e-21 Identities = 384/585 (66%), Gaps = 16/585 (3%) Strand=Plus/Minus Query 42285 ATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCC 42344 |||||| |||| || |||||| ||||| ||||||||| | ||| |||||||||| Sbjct 6163894 ATCGAGTACCATGATATCTGGCAGATGTATAAGAAGGCGGAAGCTTCCTTCTGGACCGCC 6163835 Query 42345 GAGGAGATTGACCTGGCCAAGGACAC--GGCCGGCTGGGAGTCACTGT---CTGAGAACG 42399 |||||| | |||| | ||||||||| ||| |||||| | ||| | ||| | | Sbjct 6163834 GAGGAGGTGGACCCGTCCAAGGACATTTGGCA--CTGGGAATTCCTGAAGCCCGAGGA-G 6163778 Query 42400 AAAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATG 42459 | | |||| || | | |||| ||||| || || ||| |||||||| |||| Sbjct 6163777 AGATATTTTATATCCCATG--TTCTGGTTTTCTTTGC-GCAAGTGATGGCATAGTAAATG 6163721 Query 42460 AGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACG 42519 ||| ||| | | | |||| || ||| || || ||||| |||| | Sbjct 6163720 CAAACTTGGTGGAGCGATGTAGCCAAGAAGTTCAGGTGACAGAAGCCCGCTGTTTCTGTG 6163661 Query 42520 GCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGT 42579 ||||||| || ||||| || ||| | || |||| |||| || | |||| | Sbjct 6163660 GCTTCCAAATTGCCATGGAAAACATACATTCTGGAATGTATAGTTTCCTTATTGACACTT 6163601 Query 42580 ACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCA 42639 |||| |||||| || | | | ||||| ||||| || |||||||| || Sbjct 6163600 ACATAAAAGATCCCAAAGAAAGGGAATTTCGCTTCAATGCCATTGAAACGATGCCTTGTG 6163541 Query 42640 TCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCG 42699 ||||||||||||| || ||||| | ||||||| | | | || || | || | Sbjct 6163540 TCAAGAAGAAGGCAGATTGGGCCTTGCACTGGATTGGGGACAAAGCAGCTACCTATGGGG 6163481 Query 42700 AGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCA 42759 | | | |||| |||| | || | || |||||||| |||| || || || || | Sbjct 6163480 AACGTGTTGTAGTCTTTGCTGCAGCGGAAGGCATCTT-TTCT--GGTTATTTTGCATCGA 6163424 Query 42760 TCTTCTGGCTCAAG-CAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATC 42818 | |||||||||||| | ||| | |||||| || |||||||| || || ||||| || Sbjct 6163423 TATTCTGGCTCAAGAAACGAGGACT-GATGCCTGGCCTCACCTTTTCCAATGAACTTATT 6163365 Query 42819 AGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTC 42863 || | || ||||| | || | || ||||| ||||| ||||| Sbjct 6163364 AGTGGAGATGAGGGTTTACACTGTGATTTTGCTTGCCTGATGTTC 6163320 >seq9297 Length=17183 Score = 84.2 bits (92), Expect = 4e-11 Identities = 95/125 (76%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 |||| |||||| | || || || || || |||||||| || | || || | || |||| Sbjct 1574 TGGTGGCCTTTGCTGCTGTAGAAGGAATTTTCTTCTCAGGATCTTTTGCTGCTATATTCT 1633 Query 42766 GGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 |||| ||| ||| |||| | ||||| |||||||| || || || |||||||||||||| Sbjct 1634 GGCTAAAGAAGAGAGGTCTT-ATGCCAGGACTCACTTTTTCCAATGAACTCATCAGCAGA 1692 Query 42825 GACGA 42829 || || Sbjct 1693 GATGA 1697 >seq337 Length=12475526 Score = 84.2 bits (92), Expect = 4e-11 Identities = 95/125 (76%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767 ||||||||| | || || || ||||||||||| || || | || || || || |||||| Sbjct 7490380 GTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCCGGTTCTTTTGCATCGATATTCTGG 7490321 Query 42768 CTCAAG-CAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGA 42826 |||||| | ||| | |||||| || ||||| || || || ||||| |||||||| || Sbjct 7490320 CTCAAGAAACGAGGACT-GATGCCTGGCCTCACATTTTCCAATGAACTTATCAGCAGAGA 7490262 Query 42827 CGAGG 42831 |||| Sbjct 7490261 TGAGG 7490257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944224309332080