Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20nemestrina_20[refseq_20GCF_5F000956065.1_202015-03-19] 9,733 sequences; 2,948,703,511 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq7002 123 3e-23 seq7446 111 2e-19 seq3 102 9e-17 seq758 100 3e-16 seq781 96.9 4e-15 seq1447 93.3 5e-14 seq9557 89.7 6e-13 seq5557 89.7 6e-13 seq892 89.7 6e-13 seq312 89.7 6e-13 seq1299 87.8 2e-12 seq1470 86.0 7e-12 seq114 84.2 2e-11 seq1858 82.4 8e-11 >seq7002 Length=12659153 Score = 123 bits (136), Expect = 3e-23 Identities = 161/219 (74%), Gaps = 3/219 (1%) Strand=Plus/Plus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||||||||| |||| ||| ||| || || || ||||| || | ||||| || | Sbjct 9467053 CGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCA 9467112 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || ||||| || || || ||||| || ||||||||||| | ||| | | ||||||| Sbjct 9467113 TCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTG 9467172 Query 42114 TCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 | | ||| |||| | ||||| | | || ||||| || | || || | || ||||| Sbjct 9467173 T-CTTGAATTTTGGCTTTGA-CATTCTCATGGTGTCACTGGGCTCGACCTTGAGGGTGAT 9467230 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 |||||||||||| || ||||| |||||||| ||||| || Sbjct 9467231 GGTTTTGCCCGTGAGGGTCTTCACAAAGATCTGCATGTT 9467269 >seq7446 Length=17224310 Score = 111 bits (122), Expect = 2e-19 Identities = 158/219 (72%), Gaps = 5/219 (2%) Strand=Plus/Plus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||||||||| |||| ||| ||| ||| || ||||| || | ||||| || | Sbjct 13346899 CGCAACACCAGGTGCAGGGTGGACTC---TTGGATGTTGTAGTCTGAGAGAGTGCGGCCA 13346955 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || ||||| || | || ||||| || ||||||||||| | ||| | | ||||||| Sbjct 13346956 TCTTCCAGCTGTTTGCTGGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTG 13347015 Query 42114 TCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 | | ||| |||| | ||||| || | | ||||| || | || || || | ||||| Sbjct 13347016 T-CTTGAATTTTGGCTTTGACGTTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGAT 13347074 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 ||||||||||| || ||||| |||||||| ||||| || Sbjct 13347075 GGTTTTGCCCGGGAGGGTCTTCACAAAGATCTGCATGTT 13347113 >seq3 Length=16319837 Score = 102 bits (112), Expect = 9e-17 Identities = 155/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 41995 GCAACACCAAA--TGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 || |||||| | |||| ||| ||| || || || ||||| |||| ||| || ||| | Sbjct 4626407 GCGACACCATAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCC 4626348 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || |||||||| || || || || || | ||||||||||| || | || ||||| Sbjct 4626347 ATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTT 4626288 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 || ||| ||| |||| || | | ||||| || | || || || | ||||| Sbjct 4626287 ATCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGAT 4626228 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTC 42212 ||| ||||| || || ||||| || ||||| |||||| || Sbjct 4626227 GGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATTGTC 4626188 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 4601540 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 4601481 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 4601480 TACTAACGAGGA 4601469 >seq758 Length=2790677 Score = 100 bits (110), Expect = 3e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||| || || || ||||| |||| ||||| || | || || |||||||| || || || Sbjct 2565179 CTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAA 2565120 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| | ||||||||||| || | || ||||| ||| |||||| || | | Sbjct 2565119 GATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTATCCTGGATTTTGGCCTTCACATT 2565060 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | ||||| || | ||||| || | |||||||| ||||| || || ||||| || Sbjct 2565059 TTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 2565000 Query 42197 AAAGATTTGCATTTTCAC 42214 ||||| |||||||| || Sbjct 2564999 GAAGATCTGCATTTTGAC 2564982 Score = 82.4 bits (90), Expect = 8e-11 Identities = 148/215 (69%), Gaps = 1/215 (0%) Strand=Plus/Minus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||| |||| |||| || |||||| || || ||||| |||| ||||| || | Sbjct 2565658 CGCAGGACCAGGTGCAGGGTTGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCA 2565599 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || |||||||| || || || ||||| | ||||||||||| || | || || || Sbjct 2565598 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCTTCTTTA 2565539 Query 42114 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 42173 ||| ||| || || | | | | ||||| || | ||||| || | |||||| Sbjct 2565538 TCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCAC-TCCAGGGTGATG 2565480 Query 42174 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || ||||| || || || || || ||||| ||||| Sbjct 2565479 GTCTTGCCGGTCAGGGTTTTCACGAAGATCTGCAT 2565445 >seq781 Length=2996164 Score = 96.9 bits (106), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 57003 TTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 57062 |||||||| || | | |||||||||| ||||||||||||||||||||| ||||||||| Sbjct 2459494 TTTTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACC 2459553 Query 57063 ACTATACTACCGAGGA 57078 ||||||||| |||||| Sbjct 2459554 ACTATACTAACGAGGA 2459569 Score = 93.3 bits (102), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 57003 TTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 57062 || ||||| || | | |||||||||| ||||||||||||||||||||| ||||||||| Sbjct 2377979 TTGTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACC 2377920 Query 57063 ACTATACTACCGAGGA 57078 ||||||||| |||||| Sbjct 2377919 ACTATACTAACGAGGA 2377904 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 2485645 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 2485704 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 2485705 TACTAACGAGGA 2485716 >seq1447 Length=14421193 Score = 93.3 bits (102), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 57003 TTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 57062 || ||||| || | | |||||||||| ||||||||||||||||||||| ||||||||| Sbjct 12537955 TTATCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACC 12537896 Query 57063 ACTATACTACCGAGGA 57078 ||||||||| |||||| Sbjct 12537895 ACTATACTAACGAGGA 12537880 Score = 89.7 bits (98), Expect = 6e-13 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGA 57078 |||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||| Sbjct 12481906 AATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTAACGAGGA 12481964 >seq9557 Length=14376901 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 4668647 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 4668706 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 4668707 TACTAACGAGGA 4668718 >seq5557 Length=63123227 Score = 89.7 bits (98), Expect = 6e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||| || || || ||| | || | ||||| || | || || ||||| || || || || Sbjct 51838201 CTCTTTCTGGATGTTGCAGTCTGAGAGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAA 51838260 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 ||| || ||||||||||| ||| | || ||||||| | ||| |||| | |||| Sbjct 51838261 TATCAGACGCTGCTGGTCAAGTGGGATGCCCTCCTTG-GCTTGAATTTTGGCCTTGACAT 51838319 Query 42136 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 || | ||||| || | || || |||| |||||||| ||||| || || ||||| | Sbjct 51838320 TCTCAGTGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCTGTGAGGGTCTTCA 51838379 Query 42196 CAAAGATTTGCAT 42208 ||||||| ||||| Sbjct 51838380 CAAAGATCTGCAT 51838392 >seq892 Length=8016392 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 7718524 CTCCCCGTCGGGGAATCGAACCCAGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 7718583 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 7718584 TACTAACGAGGA 7718595 >seq312 Length=11236 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 4835 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 4894 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 4895 TACTAACGAGGA 4906 >seq1299 Length=15376 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/194 (71%), Gaps = 3/194 (2%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||| || || || ||||| | | ||||| || | || || ||||| || ||||| | Sbjct 1917 CTCTTTCTGGATGTTGTAGCCTGAGAGAGTGCGGCCATCCTCCAGCTGTTTCCCAGCAAG 1858 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCA-CGCTCTCCTTGTCCATGATTTTTTG-TTTGAGC 42134 ||| || ||||||||||| | ||| | | |||||||| | ||| |||| | ||||| Sbjct 1857 TATCAGACGCTGCTGGTCAGGTGGGATATCCCTCCTTGT-CTTGAATTTTGGCTTTGACA 1799 Query 42135 GTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 42194 || | ||||| || | || | || | |||||||| |||||||| || ||||| Sbjct 1798 TTCTAAATGGTGTCACTGGGCTCAATCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTC 1739 Query 42195 ACAAAGATTTGCAT 42208 |||||||| ||||| Sbjct 1738 ACAAAGATCTGCAT 1725 >seq1470 Length=5179915 Score = 86.0 bits (94), Expect = 7e-12 Identities = 146/209 (70%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 |||| |||| ||| || ||||| || ||||| || | ||||| | | || || Sbjct 4406603 ACCAGGTGCATGGTGGACTGTTTTTGGATGTTGTAGTCTGAGAGAGTGCAGCCATCCTCC 4406662 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 |||||||| ||||| ||||| || ||||||||||| | ||| | | ||| |||| | || Sbjct 4406663 AGCTGCTTGCCAGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCTTTGT-CTTG 4406721 Query 42120 ATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178 | |||| | ||||| || | |||| || | || || || | ||||||| || Sbjct 4406722 AATTTTGGCTTTGAAATTCTCAGTGGTGTAACTGGGCTCGACCTCAAGGATGATGGTCTT 4406781 Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCA 42207 |||||| || |||| ||||||| |||| Sbjct 4406782 GCCCGTGAGGGTCTCCACAAAGAGCTGCA 4406810 >seq114 Length=10248520 Score = 84.2 bits (92), Expect = 2e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGAT 57079 |||||||| | |||||||||||||||||| || |||||||||||||||||| |||||| Sbjct 9027979 AATCGAACGCCGGTCTCCCGCGTGACAGGTGGGGATACTCACCACTATACTAACGAGGAG 9028038 Query 57080 TGAA 57083 |||| Sbjct 9028039 TGAA 9028042 >seq1858 Length=1961964 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 502212 TCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 502153 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 502152 ATACTAACGAGGA 502140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543146711372720