Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20nemestrina_20[refseq_20GCF_5F000956065.1_202015-03-19] 9,733 sequences; 2,948,703,511 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq3 141 9e-29 seq758 140 3e-28 seq1670 111 2e-19 seq9446 102 8e-17 seq2225 102 8e-17 seq7002 100 3e-16 seq1002 100 3e-16 seq892 93.3 4e-14 seq1470 91.5 1e-13 seq6668 89.7 5e-13 seq7446 87.8 2e-12 seq5557 84.2 2e-11 >seq3 Length=16319837 Score = 141 bits (156), Expect = 9e-29 Identities = 150/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || ||||| || |||||||| || | | ||||||| | ||||| |||||||| ||| Sbjct 4626388 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTTCCG 4626329 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || |||| |||||||||||||||||| ||||| || ||||| || ||| ||| Sbjct 4626328 GCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTTATCTTGGATCTTTGCCTTG 4626269 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | || |||| || || || || | || | ||||||||| |||| || Sbjct 4626268 ACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTC 4626209 Query 64427 TTTACGAAAATTTGCATT 64444 || ||||| || |||||| Sbjct 4626208 TTCACGAAGATCTGCATT 4626191 >seq758 Length=2790677 Score = 140 bits (154), Expect = 3e-28 Identities = 151/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| ||||| || |||||||| || | | ||||| | ||||| ||||||||||| Sbjct 2565184 GTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 2565125 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||||| |||||||||||| ||||| ||||| || || || ||||| ||| Sbjct 2565124 GCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTATCCTGGATTTTGGCCTTC 2565065 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | || |||| || ||||| || | || | |||||||||||||| || Sbjct 2565064 ACATTTTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTTGCCGGTCAGGGTC 2565005 Query 64427 TTTACGAAAATTTGCATTTT 64446 || ||||| || |||||||| Sbjct 2565004 TTCACGAAGATCTGCATTTT 2564985 Score = 122 bits (134), Expect = 9e-23 Identities = 146/197 (74%), Gaps = 1/197 (1%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || | | ||||| | ||||| ||||||||||| Sbjct 2565640 GTTGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 2565581 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||||| |||||||||||| || || |||||||| || || || || ||| Sbjct 2565580 GCAAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCTTCTTTATCCTGGATCTTGGCCTTC 2565521 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | || |||| || ||||| || | || | |||||||||||||| ||| Sbjct 2565520 ACATTTTCGATGGTGTCACTGGGCTCCAC-TCCAGGGTGATGGTCTTGCCGGTCAGGGTT 2565462 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 2565461 TTCACGAAGATCTGCAT 2565445 Score = 98.7 bits (108), Expect = 1e-15 Identities = 143/197 (73%), Gaps = 5/197 (3%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| |||| | || ||||||| || | | ||||| | ||||| ||||||||||| Sbjct 2565411 GTCGACTCTTCTGGA-TGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 2565353 Query 64307 GCATAAATGAGCCGCTGCTGGTC-GGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTT 64365 ||| | ||||||| ||||||||| ||| ||||| ||||| || || || ||||| ||| Sbjct 2565352 GCAAAGATGAGCCTCTGCTGGTCGGGGGGGAATGCCTTCCTTATCCTGGATTTTGGCCTT 2565293 Query 64366 TACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 ||| || | || |||| | | | | || | || | ||||||||||||| | || Sbjct 2565292 CACATTTTCGATGGTGTCACTG--GGCACCCTCAAGGGTGATGGTCTTGCCGGTC-AGGT 2565236 Query 64426 TTTTACGAAAATTTGCA 64442 || ||||| || |||| Sbjct 2565235 CTTCACGAAGATCTGCA 2565219 >seq1670 Length=4706099 Score = 111 bits (122), Expect = 2e-19 Identities = 165/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | ||| | ||| ||||||| || || || |||||||| ||||| || | Sbjct 2974251 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGA 2974192 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || | ||||| || |||||||| ||| | || || | ||||| || ||||| Sbjct 2974191 CAAAGTACGTCCATCTTCCAGGTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 2974132 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||||||| || || || || || ||||||| || | ||||| || || || Sbjct 2974131 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAAC 2974072 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTTAAT 64449 || | || | |||||| || || | ||||| |||||||| |||| ||| || Sbjct 2974071 CTCGAGGGTGATGGTCTTCCCCGTGAGGGTTTTCACGAAAATCTGCACTTTTAT 2974018 >seq9446 Length=14842378 Score = 102 bits (112), Expect = 8e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | ||| | ||| ||||||| || || || |||||||| ||||| || | Sbjct 8610032 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGA 8609973 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || | ||||| || |||||||| ||| | || || | ||| | | ||||| Sbjct 8609972 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCAGAGCAGGAGG 8609913 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||||||| || || || || || ||||||| || | |||| || || || Sbjct 8609912 AATTCCTTCCTTCTCCTGGATCTTGGCCTTTACATTTTCTATCGTATTCGAGGGTTCAAC 8609853 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | || | |||||| || || | ||||| |||||||| |||||||| Sbjct 8609852 CTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 8609802 >seq2225 Length=31540782 Score = 102 bits (112), Expect = 8e-17 Identities = 146/198 (74%), Gaps = 7/198 (4%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| || || || |||||||| || | | ||||| | ||||| ||||||||||| Sbjct 23425158 GTCGACTCCTTCTGGATGTTGTA-TCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 23425100 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||||| |||||||||||| ||| | |||| || || || || || ||| Sbjct 23425099 GCAAAGATGAGCCTCTGCTGGTCGGGGGGA--TGCTTC-TTATCCTGGATCTTGGCCTTC 23425043 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT-CTTGCCGGTCAAAGT 64425 || | || | || |||| ||| |||||||| | || | ||| ||||||||||| || Sbjct 23425042 AC-ATTTCGATGGTGTCACTGGC-TCCACTTCCAGGGTGATGGTGCTTGCCGGTCAGGGT 23424985 Query 64426 TTTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 23424984 CTTCACGAAGATCTGCAT 23424967 Score = 86.0 bits (94), Expect = 6e-12 Identities = 142/199 (71%), Gaps = 6/199 (3%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || | | ||||| | | || ||||||||||| Sbjct 23425383 GTTGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCAT--TCCAGCTGCTTGCCT 23425326 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTT-CTTTTTCTTGTATTTTTTGCTT 64365 ||| | ||||||| |||||||| ||| || || |||| |||| || || || || ||| Sbjct 23425325 GCAAAGATGAGCCTCTGCTGGTTGGGGGGGATGCCTTCCTTTATCCTGGATCTTGGCCTT 23425266 Query 64366 TACAACCTCCACTGTATCACCGGCGTCCA-CTTCTACAGTTACGGTCTTGCCGGTCAAAG 64424 ||| || | || |||| || |||| |||| | || | ||||||||| ||| | | Sbjct 23425265 CACATTTTCGATGGTGTCACTGGGCTCCACCTTCCAGGGTGATGGTCTTGCC-GTC-AGG 23425208 Query 64425 TTTTTACGAAAATTTGCAT 64443 ||| ||||| || ||||| Sbjct 23425207 GTTTCACGAAGATCTGCAT 23425189 >seq7002 Length=12659153 Score = 100 bits (110), Expect = 3e-16 Identities = 153/214 (71%), Gaps = 3/214 (1%) Strand=Plus/Plus Query 64234 CACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTC 64293 ||| || || | || || ||||| || |||||||| |||| || ||||| | ||||| Sbjct 9467058 CACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCATCTTC 9467117 Query 64294 AAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTG 64353 ||||| ||||||||| | || || ||||||||||| || || || || || || ||||| Sbjct 9467118 CAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTCTTG 9467177 Query 64354 TATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCT 64412 | |||| ||||| ||| || || || |||| || || || | | || | ||| | Sbjct 9467178 -AATTTTGGCTTTGACATTCT-CATGGTGTCACTGGGCTCGACCTTGAGGGTGATGGTTT 9467235 Query 64413 TGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 |||| || | || || || || || ||||| || Sbjct 9467236 TGCCCGTGAGGGTCTTCACAAAGATCTGCATGTT 9467269 >seq1002 Length=29577158 Score = 100 bits (110), Expect = 3e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||||||||| || |||||||| || | | ||||| | ||||| |||||| |||| Sbjct 10709365 GTCGATTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCATGCCT 10709306 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||||| |||| ||||||| || ||||| || || || || || ||| Sbjct 10709305 GCAAAGATGAGCCTCTGCGGGTCGGGGCAGATGCCTTCCTTATCCTGGATATTGGCCTTC 10709246 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| | | || |||| || ||||| || | || | ||||||| | |||| || Sbjct 10709245 ACATTTTAGATGGTGTCACTGGGCTCCACATCAAGGGTGATGGTCTTGTCAGTCAGGGTC 10709186 Query 64427 TTTACGAAAATTTGCATTTT 64446 || ||||| | |||||||| Sbjct 10709185 TTCACGAAGACCTGCATTTT 10709166 >seq892 Length=8016392 Score = 93.3 bits (102), Expect = 4e-14 Identities = 140/198 (71%), Gaps = 1/198 (1%) Strand=Plus/Minus Query 64250 GATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCA 64309 || ||||| ||||||||||| || | | |||| | ||||| ||| ||||||| || Sbjct 5021616 GACTCTTTCTGAATGTTGTAGTCAGAAAGAGTGCAGCCATCTTCTAGCCGCTTGCCTACA 5021557 Query 64310 TAAATGAGCCGCTGCTGGTC-GGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTAC 64368 | ||||| | ||||||||| | | || || |||||||| || || || || ||| || Sbjct 5021556 AAGATGAGACTCTGCTGGTCAGTGGGGGATGCCTTCTTTATCCTGGATCTTGGCCTTCAC 5021497 Query 64369 AACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTT 64428 | | | | |||| || ||||| || | | | ||||||||||| || ||||| Sbjct 5021496 ATTTTGGAGGATGTCACTGGGCTCCACCTCCAGGGAGATGGTCTTGCCGGGCAGGGTTTT 5021437 Query 64429 TACGAAAATTTGCATTTT 64446 | ||| ||||||||||| Sbjct 5021436 CAGGAAGATTTGCATTTT 5021419 >seq1470 Length=5179915 Score = 91.5 bits (100), Expect = 1e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || || || || || || | |||||| |||||||| |||| || |||| | || Sbjct 4406600 AGAACCAGGTGCATGGTGGACTGTTTTTGGATGTTGTAGTCTGAGAGAGTGCAGCCATCC 4406659 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| ||| | || || ||||||||||| || || || || ||||| ||| Sbjct 4406660 TCCAGCTGCTTGCCAGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCTTTGTCT 4406719 Query 64352 TGTATTTT 64359 || ||||| Sbjct 4406720 TGAATTTT 4406727 >seq6668 Length=25972781 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 64238 AGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGC 64297 ||||||| || | || |||||||||||| | || | | || || ||||||| || Sbjct 3822653 AGATGAAGGGTAGGCTCCTTTTGAATGTTGCAGTCAGACAAAGTACGTCCGTCTTCCAGT 3822594 Query 64298 TGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATT 64357 |||| ||| ||| | || || | ||||| || |||||||||||||| || || || || Sbjct 3822593 TGCTCGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATC 3822534 Query 64358 TTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCG 64417 || ||||||| || | ||||| || || | || | || | ||||| || Sbjct 3822533 TTGGCCTTTACATTTTCTGCCGTATCTGAGGGTTCAATCTCAAGGGTGATAGTCTTCCCC 3822474 Query 64418 GTCAAAGTTTTTACGAAAATTTGCATTTT 64446 | | ||||| |||||||| |||||||| Sbjct 3822473 CTTAGGGTTTTCACGAAAATCTGCATTTT 3822445 >seq7446 Length=17224310 Score = 87.8 bits (96), Expect = 2e-12 Identities = 135/190 (71%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 64258 TTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAG 64317 ||| |||||||| |||| || ||||| | ||||| ||||| |||| |||| | || || Sbjct 13346925 TTGGATGTTGTAGTCTGAGAGAGTGCGGCCATCTTCCAGCTGTTTGCTGGCAAATATCAG 13346984 Query 64318 CCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCA 64376 ||||||||||| || || || || || || ||||| | |||| ||||| || ||| | Sbjct 13346985 ACGCTGCTGGTCAGGTGGGATACCCTCCTTGTCTTG-AATTTTGGCTTTGACGTTCTCAA 13347043 Query 64377 CTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAA 64436 || |||| || || || || | || | ||| ||||| | | || || || || | Sbjct 13347044 TGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTTTTGCCCGGGAGGGTCTTCACAAAGA 13347103 Query 64437 TTTGCATTTT 64446 | ||||| || Sbjct 13347104 TCTGCATGTT 13347113 >seq5557 Length=63123227 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 64250 GATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCA 64309 || ||||| || |||||| | |||| || ||||| | || || ||||| ||||| ||| Sbjct 51838199 GACTCTTTCTGGATGTTGCAGTCTGAGAGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCA 51838258 Query 64310 TAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACA 64369 | || || ||||||||||| | || || || || || |||| ||||| ||| ||| Sbjct 51838259 AATATCAGACGCTGCTGGTCAAGTGGGATGCCCTCCTTGGCTTGAATTTTGGCCTTGACA 51838318 Query 64370 ACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTT 64429 ||| || |||| || || || || | || | ||||||||| || | || || Sbjct 51838319 TTCTCAGTGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCTGTGAGGGTCTTC 51838378 Query 64430 ACGAAAATTTGCAT 64443 || || || ||||| Sbjct 51838379 ACAAAGATCTGCAT 51838392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499584011964520