Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20nemestrina_20[refseq_20GCF_5F000956065.1_202015-03-19] 9,733 sequences; 2,948,703,511 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq7002 129 7e-25 seq7446 122 1e-22 seq758 120 3e-22 seq3 114 1e-20 seq5557 100 3e-16 seq2225 95.1 1e-14 seq1670 87.8 2e-12 seq9446 82.4 9e-11 >seq7002 Length=12659153 Score = 129 bits (142), Expect = 7e-25 Identities = 171/235 (73%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| |||| | ||||||||||| |||| || ||| || ||||| |||||||| | Sbjct 9467039 TGCCACCTCGCAGGCGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTG 9467098 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | |||||||| | || || ||||| |||||||| ||||||| ||||||||||| | | Sbjct 9467099 AGAGAGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTG 9467158 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | | |||||||| | ||| || ||| | | || ||||| || | || | Sbjct 9467159 GGATACCCTCCTTGT-CTTGAATTTTGGCTTTGACATTCTCATGGTGTCACTGGGCTCGA 9467217 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT-TTTGC 46598 | | | ||||||||||||||||| || || || |||||||| ||||| ||||| Sbjct 9467218 CCTTGAGGGTGATGGTTTTGCCCGTGAGGGTCTTCACAAAGATCTGCATGTTTGC 9467272 >seq7446 Length=17224310 Score = 122 bits (134), Expect = 1e-22 Identities = 169/235 (72%), Gaps = 4/235 (2%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| |||| | ||||||||||| |||| || ||| |||||| |||||||| | Sbjct 13346885 TGCCACCTCGCAGGCGCAACACCAGGTGCAGGGTGGACTC---TTGGATGTTGTAGTCTG 13346941 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | |||||||| | || || ||||| |||| ||| ||||||| ||||||||||| | | Sbjct 13346942 AGAGAGTGCGGCCATCTTCCAGCTGTTTGCTGGCAAATATCAGACGCTGCTGGTCAGGTG 13347001 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | | ||||||||| || || |||| || | | ||||| || | || | Sbjct 13347002 GGATACCCTCCTTGTCTTGAATTTTGGCTTTGACGTTCTCAATGGTGTCACTGGGCTCGA 13347061 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT-TTTGC 46598 | || | |||||||||||||||| || || || |||||||| ||||| ||||| Sbjct 13347062 CCTCAAGGGTGATGGTTTTGCCCGGGAGGGTCTTCACAAAGATCTGCATGTTTGC 13347116 >seq758 Length=2790677 Score = 120 bits (132), Expect = 3e-22 Identities = 164/228 (72%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 46366 GCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGA 46425 ||| || || | |||| ||||| |||| || |||||| ||||| |||||||| || Sbjct 2565671 GCCACCCCTCAGGCGCAGGACCAGGTGCAGGGTTGACTCCTTCTGGATGTTGTAGTCAGA 2565612 Query 46426 TAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGG 46485 |||||||| | || || ||||||||||| || || || | | ||||||||||| || Sbjct 2565611 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGG 2565552 Query 46486 CACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 46545 | || || || ||| |||||| ||| | | | | ||||| || | ||||| Sbjct 2565551 GATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCAC 2565492 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| |||||||| ||||| ||||| ||||| || ||||| ||||| Sbjct 2565491 -TCCAGGGTGATGGTCTTGCCGGTCAGGGTTTTCACGAAGATCTGCAT 2565445 Score = 111 bits (122), Expect = 2e-19 Identities = 142/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || ||||| |||||||| || |||||||| | || || ||||||||||| || || Sbjct 2565179 CTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAA 2565120 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | | ||||||||||| || | || ||||| ||| ||| || ||| | | Sbjct 2565119 GATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTATCCTGGATTTTGGCCTTCACATT 2565060 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | ||||| || | ||||| || | |||||||| ||||| ||||| || || || Sbjct 2565059 TTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 2565000 Query 46582 AAAGATTTGCATTTTG 46597 ||||| ||||||||| Sbjct 2564999 GAAGATCTGCATTTTG 2564984 >seq3 Length=16319837 Score = 114 bits (126), Expect = 1e-20 Identities = 141/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || ||||| |||||||| || || |||||| | || || |||||||| ||||| || Sbjct 4626383 CTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAA 4626324 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| | ||||||||||| || | || ||||| || |||||| ||||| | Sbjct 4626323 GATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTTATCTTGGATCTTTGCCTTGACATT 4626264 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||||| || | || || || | |||||||| ||||| ||||| || || || Sbjct 4626263 CTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 4626204 Query 46582 AAAGATTTGCATT 46594 ||||| |||||| Sbjct 4626203 GAAGATCTGCATT 4626191 >seq5557 Length=63123227 Score = 100 bits (110), Expect = 3e-16 Identities = 153/216 (71%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 46380 GCAACACCAGATGCA--ATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | |||| |||| ||| ||||| || ||||| ||| |||| || |||||||| | Sbjct 51838179 GCAGCCCCAGGTGCAGGATGGACTCT--TTCTGGATGTTGCAGTCTGAGAGAGTGCGGCC 51838236 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || ||||| ||||| || ||||||| ||||||||||| || | || |||||| Sbjct 51838237 ATCCTCCAGCTGTTTGCCCGCAAATATCAGACGCTGCTGGTCAAGTGGGATGCCCTCCTT 51838296 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 | | || || ||||| || | ||||| || | || || || | ||||| Sbjct 51838297 GGCTTGAATTTTGGCCTTGACATTCTCAGTGGTGTCACTGGGCTCGACCTCGAGGGTGAT 51838356 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| ||||| || || || || |||||||| ||||| Sbjct 51838357 GGTCTTGCCTGTGAGGGTCTTCACAAAGATCTGCAT 51838392 >seq2225 Length=31540782 Score = 95.1 bits (104), Expect = 1e-14 Identities = 163/228 (71%), Gaps = 8/228 (4%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| | |||| ||||| |||| || |||||| ||||| ||||| || || Sbjct 23425187 CCACCTCTCAGGCGCAGGACCAGGTGCAG-GTCGACTCCTTCTGGATGTTGTA-TCAGAA 23425130 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 |||||||| | || || ||||||||||| || || || | | ||||||||||| || Sbjct 23425129 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGG-GGGG 23425071 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | || ||| ||| |||||| ||| | | | | | ||||| || | ||||| Sbjct 23425070 ATG--CTTCTTATCCTGGATCTTGGCCTTCA-CATTTCGATGGTGTCACT-GGCTCCACT 23425015 Query 46547 TCCACCGTGATGGT-TTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| |||||||| ||||| ||||| || || || ||||| ||||| Sbjct 23425014 TCCAGGGTGATGGTGCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 23424967 Score = 87.8 bits (96), Expect = 2e-12 Identities = 162/230 (70%), Gaps = 7/230 (3%) Strand=Plus/Minus Query 46366 GCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGA 46425 ||| || || | |||| ||||| |||| || |||||| ||||| |||||||| || Sbjct 23425413 GCCACCCCTCAGGCGCAGGACCAG-TGCAGGGTTGACTCCTTCTGGATGTTGTAGTCAGA 23425355 Query 46426 TAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGG 46485 |||||||| | | || ||||||||||| || || || | | |||||||| || || Sbjct 23425354 AAGAGTGCGGCCAT--TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTTGGGGGG 23425297 Query 46486 CACGCTCTCC-TTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | || ||| || ||| |||||| ||| | | | | ||||| || | |||| Sbjct 23425296 GATGCCTTCCTTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCA 23425237 Query 46545 -CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | |||| |||||||| ||| ||||||| | ||| || ||||| ||||| Sbjct 23425236 CCTTCCAGGGTGATGGTCTTG-CCGTCAG-GGTTTCACGAAGATCTGCAT 23425189 >seq1670 Length=4706099 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 46381 CAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTC 46440 |||||| ||||| | ||| ||||||||| ||||||||||| || | ||| || | || Sbjct 2974236 CAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATC 2974177 Query 46441 GTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500 || || |||||||| || || |||| | ||||| || | || | | ||||| || Sbjct 2974176 TTCCAGGTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 2974117 Query 46501 CATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGT 46560 | |||||| ||| | | | | ||| || | ||| || || | |||||||| Sbjct 2974116 CTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTGATGGT 2974057 Query 46561 TTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 || ||||| || ||||| || || || |||| ||| Sbjct 2974056 CTTCCCCGTGAGGGTTTTCACGAAAATCTGCACTTT 2974021 >seq9446 Length=14842378 Score = 82.4 bits (90), Expect = 9e-11 Identities = 151/220 (69%), Gaps = 6/220 (3%) Strand=Plus/Minus Query 46381 CAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTC 46440 |||||| ||||| | ||| ||||||||| ||||||||||| || | ||| || | || Sbjct 8610017 CAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATC 8609958 Query 46441 GTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500 || || |||||||| || || |||| | ||| | | | || | | ||||| || Sbjct 8609957 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCAGAGCAGGAGGAATTCCTTCCTTCTC 8609898 Query 46501 CATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGA---TTCCACATCCACCGTGAT 46557 | |||||| ||| | | | | ||| | |||| ||| || || | ||||| Sbjct 8609897 CTGGATCTTGGCCTTTACATTTTCTATCGTAT---TCGAGGGTTCAACCTCGAGGGTGAT 8609841 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 ||| || ||||| || ||||| || || || ||||||||| Sbjct 8609840 GGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTTG 8609801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565169631683160