Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20nemestrina_20[refseq_20GCF_5F000956065.1_202015-03-19] 9,733 sequences; 2,948,703,511 total letters Query= NC_015049.1 Length=124335 Score E Sequences producing significant alignments: (Bits) Value seq3370 86.0 5e-12 seq1525 86.0 5e-12 seq781 86.0 5e-12 >seq3370 Length=164775 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| | ||||||||||| ||| | ||||| || | ||| || | | || | Sbjct 107613 CCTCATGCTGCACATGACAGGTGTATCTCTGCTCCTTTCCAGAAGGCACCACCACAGCCG 107554 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || ||||||||||| || || ||||| ||||| || || | | || Sbjct 107553 CCCACTTCTGGAAGGTTCCATCTCCTGCAGGCCTGGTCTCCACGAGCTCCGTGTCCTGAG 107494 Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTGG 528 | | | ||| | || ||||| || | || || |||||||| |||||||| || Sbjct 107493 TTTGGTCCTCCCCATCCCGCTGCCAGGTCAGTGTGATCTCCGCAGGGTAGAAGCCCAGGG 107434 Query 529 CCCAACATTTTAGTGTTACTTGACGGTCAG 558 |||| || | || || | | | |||||| Sbjct 107433 CCCAGCACCTCAGGGTGGCCTCATGGTCAG 107404 >seq1525 Length=1495729 Score = 86.0 bits (94), Expect = 5e-12 Identities = 131/187 (70%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| | ||||| || || ||| | ||||| | | |||||| | | |||| Sbjct 778796 CCTCATGCTGCACATGGCACGTGTATCTCTGCTCCTCTCCAGAAGGTACCACCACAGCTG 778737 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| ||||||||||| || || || ||||| ||||| || || | | | Sbjct 778736 CCCACTTCTGGAAAGTTCCATCCCCTGCAGGCCTGGTCTCCACAAGCTCCGTGTCCTGGG 778677 Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTGG 528 || | | ||| | || ||||| || | || || ||||||||||||||||| || Sbjct 778676 TCTGGTCCTCCCCATCCCGCTGCCAGGTCACTGTGATCTCCGCAGGATAGAAGCCCAGGG 778617 Query 529 CCCAACA 535 |||| || Sbjct 778616 CCCAGCA 778610 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| | ||||||||||| ||| | ||||| || | ||| || | | || | Sbjct 93065 CCTCATGCTGCACATGACAGGTGTATCTCTGCTCCTTTCCAGAAGGCACCACCACAGCCG 93006 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || ||||||||||| || || ||||| ||||| || || | | || Sbjct 93005 CCCACTTCTGGAAGGTTCCATCTCCTGCAGGCCTGGTCTCCACGAGCTCCGTGTCCTGAG 92946 Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTGG 528 | | | ||| | || |||| || | || || |||||||| |||||||| || Sbjct 92945 TTTGGTCCTCCCCATCCCGCCGCCAGGTCAGTGTGATCTCCGCAGGGTAGAAGCCCAGGG 92886 Query 529 CCCAACATTTTAGTGTTACTTGACGGTCAG 558 |||| || | || || | | | |||||| Sbjct 92885 CCCAGCACCTCAGGGTGGCCTCATGGTCAG 92856 >seq781 Length=2996164 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||||| ||||||||||| ||| | ||||| | | ||| || | | |||| Sbjct 57199 CCTCATGTTGCACATGACAGGTGTATCTCTGCTCCTCTCCAGAAGGCACCACCACAGCTG 57140 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || |||||||| || | || ||||| ||||| || || | | || Sbjct 57139 CCCACTTCTGGAAGGTTCCATCCCCTGTAGGCCTGGTCTCCACGAGCTCCGTGTCCTGAG 57080 Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTGG 528 | ||| |||| | || ||||| || | || || ||||||| |||||||| || Sbjct 57079 TTTGTTCCTCTCCATCCCGCTGCCAGGTCAGTGTGATCCCCGCAGGGTAGAAGCCCAGGG 57020 Query 529 CCCAACATTTTAGTGTTACTTGACGGTCAG 558 |||| || | || || | | | |||||| Sbjct 57019 CCCAGCACCTCAGGGTGGCCTCATGGTCAG 56990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397700018854248