Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20nemestrina_20[refseq_20GCF_5F000956065.1_202015-03-19] 9,733 sequences; 2,948,703,511 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq7002 150 1e-31 seq7446 127 1e-24 seq1299 120 2e-22 seq5557 118 7e-22 seq3 113 3e-20 seq1226 105 4e-18 seq547 105 4e-18 seq758 93.3 3e-14 seq1 84.2 1e-11 >seq7002 Length=12659153 Score = 150 bits (166), Expect = 1e-31 Identities = 165/217 (76%), Gaps = 3/217 (1%) Strand=Plus/Plus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 ||| |||| ||| | ||| |||||||| ||||| ||||| || || | || |||| Sbjct 9467055 CAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCATC 9467114 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 ||||||||||| ||||||||||| || || |||||||| | || | ||||||||||| Sbjct 9467115 TTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTC 9467174 Query 34889 GCTAATCTTCTGTTTGACGGATGCT-ATCGATTCACCGGCCTCAACATCGACGGTTATGG 34947 ||| || |||||| || || || | |||| || ||| || | || ||| |||| Sbjct 9467175 TTGAATTTTGGCTTTGAC--ATTCTCATGGTGTCACTGGGCTCGACCTTGAGGGTGATGG 9467232 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 |||| |||||||| |||||||||||||||||||| || Sbjct 9467233 TTTTGCCCGTGAGGGTCTTCACAAAGATCTGCATGTT 9467269 >seq7446 Length=17224310 Score = 127 bits (140), Expect = 1e-24 Identities = 141/188 (75%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 34797 TGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGT 34856 || ||||| ||||| || || | || |||| ||||||||||| | ||||||||| || Sbjct 13346926 TGGATGTTGTAGTCTGAGAGAGTGCGGCCATCTTCCAGCTGTTTGCTGGCAAATATCAGA 13346985 Query 34857 CGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATC 34916 || |||||||| | || | ||||||||||| ||| || ||||||| | || Sbjct 13346986 CGCTGCTGGTCAGGTGGGATACCCTCCTTGTCTTGAATTTTGGCTTTGACGTTCTCAATG 13347045 Query 34917 GATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATC 34976 | |||| || ||| || || | ||| |||||||| |||| ||| ||||||||||||||| Sbjct 13347046 GTGTCACTGGGCTCGACCTCAAGGGTGATGGTTTTGCCCGGGAGGGTCTTCACAAAGATC 13347105 Query 34977 TGCATATT 34984 ||||| || Sbjct 13347106 TGCATGTT 13347113 >seq1299 Length=15376 Score = 120 bits (132), Expect = 2e-22 Identities = 145/194 (75%), Gaps = 5/194 (3%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| ||| | || || | || |||| ||||||||||| || |||| | Sbjct 1916 TCTTTCTGGATGTTGTAGCCTGAGAGAGTGCGGCCATCCTCCAGCTGTTTCCCAGCAAGT 1857 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACC-CCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || || |||||||| | || | ||||||||||| ||| || |||||| | Sbjct 1856 ATCAGACGCTGCTGGTCAGGTGGGATATCCCTCCTTGTCTTGAATTTTGGCTTTGAC--A 1799 Query 34910 TGCTA--TCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | ||| | | |||| || ||||| || | ||| ||||| || |||||||| |||||| Sbjct 1798 TTCTAAATGGTGTCACTGGGCTCAATCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTC 1739 Query 34968 ACAAAGATCTGCAT 34981 |||||||||||||| Sbjct 1738 ACAAAGATCTGCAT 1725 >seq5557 Length=63123227 Score = 118 bits (130), Expect = 7e-22 Identities = 143/193 (74%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| |||| || || | || |||| ||||||||||| || |||||| Sbjct 51838202 TCTTTCTGGATGTTGCAGTCTGAGAGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAAT 51838261 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||| | ||| || ||||| || Sbjct 51838262 ATCAGACGCTGCTGGTCAAGTGGGATGCCCTCCTTGGCTTGAATTTTGGCCTTGAC--AT 51838319 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || | | |||| || ||| || |||| ||| ||||| || || ||||| ||||||| Sbjct 51838320 TCTCAGTGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCTGTGAGGGTCTTCA 51838379 Query 34969 CAAAGATCTGCAT 34981 ||||||||||||| Sbjct 51838380 CAAAGATCTGCAT 51838392 >seq3 Length=16319837 Score = 113 bits (124), Expect = 3e-20 Identities = 142/193 (74%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| ||||| || ||| | || |||| |||||||| ||||||||||| Sbjct 4626382 TCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAG 4626323 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | |||||||| | || | || ||||| || ||||| ||||| || Sbjct 4626322 ATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTTATCTTGGATCTTTGCCTTGAC--AT 4626265 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | |||| || |||||| || | ||| ||||| || || || || ||||||| Sbjct 4626264 TCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCA 4626205 Query 34969 CAAAGATCTGCAT 34981 | ||||||||||| Sbjct 4626204 CGAAGATCTGCAT 4626192 Score = 104 bits (114), Expect = 2e-17 Identities = 153/212 (72%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| |||||||| ||||| ||||| || || || || |||| ||| Sbjct 14926607 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTCTAGTCTGAGAGACTGCGGCCATCCTCC 14926548 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||||| || |||||||| || | |||||||| || | | |||| |||||| Sbjct 14926547 GGCTGTTTGCCCGCAAATATCAGACACTGCTGGTCAGGCAGGATGCCCTACTTGTCTTGG 14926488 Query 34893 ATCTTCTG-TTTGACGGATGCTA--TCGATTCACCGGCCTCAACATCGACGGTTATGGTT 34949 || ||| | |||||| || || | | || | || ||| || || | ||| ||||| Sbjct 14926487 AT-TTCGGCTTTGAC--ATTCTCAGTGGTGTCCCTGGGCTCCACCTCAAGGGTGATGGTC 14926431 Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || ||| |||| || ||||||||||||||||| Sbjct 14926430 TTGCCCATGAGGGTGTTCACAAAGATCTGCAT 14926399 Score = 89.7 bits (98), Expect = 3e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || |||||||| | || |||||||| | ||| |||||||| ||||| ||||| || Sbjct 4628627 CCCCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 4628568 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | ||| |||| ||||||||||| || ||||| || | | |||||||| | || Sbjct 4628567 AGGGTGCGTCCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGG 4628508 Query 34875 ACCCCCTCCTTGTC 34888 | || |||||||| Sbjct 4628507 ATGCCTTCCTTGTC 4628494 >seq1226 Length=1830524 Score = 105 bits (116), Expect = 4e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| |||||||| || ||||| | | |||| |||| |||||| || ||||| Sbjct 1001428 TCTTTCTGGATGTTATAATCTGAAAGAGTGTGGCCATCCTCCAACTGTTTGCCCACAAAT 1001369 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | |||||||| | || | ||||||||||| ||||| |||||| | Sbjct 1001368 ATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCATGGATCTTGGCTTTGACATTT 1001309 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | | | |||| || || || || | ||| |||||| |||| ||||| ||||| ||| Sbjct 1001308 TCACTGGTGTCACTGGGCTGGACCTCAAAGGTGATGGTTCTTCCTGTGAGGGTCTTTACA 1001249 Query 34971 AAGATCTGCAT 34981 |||||||||| Sbjct 1001248 GAGATCTGCAT 1001238 >seq547 Length=9034655 Score = 105 bits (116), Expect = 4e-18 Identities = 136/184 (74%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 34800 ATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGT 34859 |||| ||||| || || |||| |||| ||||||||||| ||||||| ||| || | Sbjct 8022829 ATGTCGTAGTCTGAGAGAGTTCGGCCATCCTCCAGCTGTTTGCCGGCAAGTATCAGATGC 8022770 Query 34860 TGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT-ATCGA 34918 |||||||| | || | ||||||||||| ||| || |||||| || || || | Sbjct 8022769 TGCTGGTCAGGTGGGATACCCTCCTTGTCTTGAATTTTGGCTTTGAC--ATCCTCATTGG 8022712 Query 34919 T-TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCT 34977 | |||| || || || || | || ||||| || ||||| || |||||||||||||||| Sbjct 8022711 TGTCACTGGGCTTGACCTCAAGAGTGATGGTCTTGCCCGTAAGGGTCTTCACAAAGATCT 8022652 Query 34978 GCAT 34981 |||| Sbjct 8022651 GCAT 8022648 >seq758 Length=2790677 Score = 93.3 bits (102), Expect = 3e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| ||||| ||||| | || |||| |||||||| || || ||||| Sbjct 2565178 TCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAG 2565119 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | |||||||| | || | || ||||| || || || || || | Sbjct 2565118 ATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTATCCTGGATTTTGGCCTTCACATTT 2565059 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | |||| || ||| || || | ||| ||||| || || || || |||||||| Sbjct 2565058 TCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACG 2564999 Query 34971 AAGATCTGCATATT 34984 ||||||||||| || Sbjct 2564998 AAGATCTGCATTTT 2564985 Score = 84.2 bits (92), Expect = 1e-11 Identities = 156/228 (68%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || ||||||| | || |||| ||| | || || ||||| ||||| ||||| ||| Sbjct 2565670 CCACCCCTCAGGCGCAGGACCAGGTGCAGGGTTGACTCCTTCTGGATGTTGTAGTCAGAA 2565611 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || |||| |||||||| || || ||||| || || | |||||||| | || Sbjct 2565610 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGG 2565551 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || || || || ||||| || || | | || | |||| || ||| || Sbjct 2565550 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCAC- 2565492 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || | ||| ||||| || || || || || ||||| |||||||||||| Sbjct 2565491 TCCAGGGTGATGGTCTTGCCGGTCAGGGTTTTCACGAAGATCTGCATA 2565444 >seq1 Length=22034461 Score = 84.2 bits (92), Expect = 1e-11 Identities = 85/109 (78%), Gaps = 4/109 (4%) Strand=Plus/Plus Query 34878 CCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACAT 34935 ||||||||||| ||| || |||||| || || || | |||| || ||| || | Sbjct 1467776 CCCTCCTTGTCTTGAATTTTGGCTTTGAC--ATTCTCAATGGTGTCACTGGGCTCGACCT 1467833 Query 34936 CGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 ||| ||| |||||||| |||||||| |||||||||||||||||||| || Sbjct 1467834 CGAGGGTGATGGTTTTGCCCGTGAGGGTCTTCACAAAGATCTGCATGTT 1467882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324595091658024