Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20nemestrina_20[refseq_20GCF_5F000956065.1_202015-03-19] 9,733 sequences; 2,948,703,511 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq37 306 4e-78 seq237 201 1e-46 seq337 116 4e-21 seq9297 111 2e-19 seq3224 102 9e-17 seq5558 84.2 2e-11 >seq37 Length=10148950 Score = 306 bits (338), Expect = 4e-78 Identities = 636/937 (68%), Gaps = 19/937 (2%) Strand=Plus/Plus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669 ||| || ||| ||||||| | ||||||||||||| || || | || |||||||| Sbjct 6162988 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTG--TTGGATTCGACACCACTCCCATC 6163045 Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 | ||||| || ||||| || |||||||| || || |||| | ||| ||| Sbjct 6163046 CTCTGATACTCCTTTACTCTCTTCTCAAAGAAGTTCGTCTTTC-----AGTGAAATATTC 6163100 Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789 |||||||| |||||||| || | ||| | | | || | || || | ||| | Sbjct 6163101 TCCATAAAGTCAAATGGGTTCTCTACTCTGAAAACCTTGCTAAAACCCAGTTCCGGCAT- 6163159 Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849 |||| || || ||||| | ||| ||| ||||| | | |||||||| || || | Sbjct 6163160 -GTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGC 6163218 Query 18850 TTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATA-TAAT 18908 || ||||| | || || || || ||||| |||||||| || || | ||||| | | Sbjct 6163219 TTCACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCAT-TGATAATTCT 6163277 Query 18909 AGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAAA 18968 | | ||| || || || || || || || || ||||||| || ||||| Sbjct 6163278 TTCTCTTATTCTCTCCTCCAATGGTTTGTGTACCAGGTGATTGAACATCAGGCAAGCAAA 6163337 Query 18969 ATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCAT 19028 |||||| |||| ||||| |||| ||| || | |||||| ||||| || | |||||||| Sbjct 6163338 ATCACAGTGTAAACCCTCATCTCCACTAATAAGTTCATTGGAAAAGGTGAGGCCAGGCAT 6163397 Query 19029 CAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTC 19088 |||||||| ||| || | ||||||||| || ||||| | ||||||||| || ||||| Sbjct 6163398 CAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAG---ATGCCTTC 6163454 Query 19089 TACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTT 19148 |||| ||||| | || | | ||| ||||| |||| | || | |||||| | Sbjct 6163455 CGCTGCAGCAAAGACTACAACACGTTCCCCATAGGTAGCTGCTTTGTCCCCAATCCAGTG 6163514 Query 19149 CAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATA 19208 || |||||||| |||||||| || ||||| ||||| || || || | ||| || || | Sbjct 6163515 CAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGCGAAA 6163574 Query 19209 CATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATG 19268 | || | | |||||| | || | || || | ||||| |||||| | ||||| Sbjct 6163575 TTCCCTTTCTTTGGGATCTTTTATGTAAGTGTCAATAAGGAAACTATACATTCCAGAATG 6163634 Query 19269 AATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTC 19328 || ||||| || || || || || || | ||||| | |||||||| | ||| ||||| Sbjct 6163635 TATGTTTTCCATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCACCTGAACTTC 6163694 Query 19329 ACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGC 19388 | | ||| || ||||| ||| |||| ||||| |||||||| || ||||| || | Sbjct 6163695 TTGGCTACATCGCTCCACCAAGTTTGCATTTACTATGCCATCACTTGC-GCAAAGAAAAC 6163753 Query 19389 TAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATT-CCAATCATTAATAT 19447 | ||||| ||||||| | | || || | | || | | ||| ||| | ||| | Sbjct 6163754 CAGAACATGGGATATAAAATATCTCTCCTC-GGGCTTCAGGAATTCCCAGTGCCAAATGT 6163812 Query 19448 CTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGT 19507 | || || || || || || | ||||| || ||||| || || || |||||||| | Sbjct 6163813 CCTTGGACGGGTCCACCTCCTCGGCGGTCCAGAAGGAAGCTTCCGCCTTCTTATACATCT 6163872 Query 19508 TCCATATATCACGATATTGTATAGGAAATATAACAAA 19544 ||| |||||| | || | || || || || ||||| Sbjct 6163873 GCCAGATATCATGGTACTCGATGGGGAAGATGACAAA 6163909 >seq237 Length=7777549 Score = 201 bits (222), Expect = 1e-46 Identities = 387/564 (69%), Gaps = 9/564 (2%) Strand=Plus/Plus Query 18961 CATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAA 19020 || ||||| | ||| |||| ||||| || || || || | |||||| |||||||| | Sbjct 5488340 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 5488399 Query 19021 CCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAAT 19080 ||||||||||||||| ||| || | ||||||||| ||||| || ||||||||||| Sbjct 5488400 CCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGAAG 5488459 Query 19081 ATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGA 19140 | | ||| ||| ||||| || | | | |||||||| || | || || || | Sbjct 5488460 GTGCTTTCCACTAGGGCAAAGGCTGCAACACGTTCTCCATGGGTAACGTCTTTGTTCCCA 5488519 Query 19141 ATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTA 19200 ||||| || ||||| | |||||||| || ||||| |||||||| | || | ||| Sbjct 5488520 ATCCAACACAAGACCCAAACTGCCTTCTTCTTGACACA-GGCATTGTTCCAATGGCATTG 5488578 Query 19201 AATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATT 19260 || ||| | | || | |||||||| || || || || | | ||| | || Sbjct 5488579 AAGAGAAATTCCCTTTCTTTGTTATCTTTA--ATGTGTGTCAATAAGGAGACTATTTATG 5488636 Query 19261 TCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATC 19320 || ||||| || |||||| |||| || || || || || || || | |||||| ||| Sbjct 5488637 TCAGAATGTATGTTTTCTGTAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCTGTAATC 5488696 Query 19321 TGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCA 19380 || | ||| | |||| ||| ||||| ||||||| ||||| ||||||| |||||| Sbjct 5488697 TGAATTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTACTATCCCATCACATGCTGCA 5488756 Query 19381 AAAAATGC--TAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATT-CCAA 19437 || || || |||| | | | ||||||| | |||| || | | || | | || ||| Sbjct 5488757 AAGAAAGCCAGAATATAGGAT--ATAAAATATCTTTCCTCAG-GCTTCAGGGCTTCCCAG 5488813 Query 19438 TCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTT 19497 | ||| || || || | | || || | | |||| |||||| ||||| |||| Sbjct 5488814 TGCCAAATGTCCTTGGACAGGTTCACCTCCTGGGCCATCCAGAAAGAAACCTCTACTTTC 5488873 Query 19498 TTATACATGTTCCATATATCACGA 19521 |||||| | ||||| |||||| || Sbjct 5488874 TTATACGTTTTCCAAATATCATGA 5488897 >seq337 Length=12475526 Score = 116 bits (128), Expect = 4e-21 Identities = 100/124 (81%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || || | |||||| |||||||| | |||||||||||||||| ||| | Sbjct 7490257 CCTCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 7490316 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||||||||| || ||||| || || |||||||| || ||||| ||||| ||||| | Sbjct 7490317 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 7490376 Query 19103 CAAC 19106 | || Sbjct 7490377 CTAC 7490380 Score = 105 bits (116), Expect = 8e-18 Identities = 112/146 (77%), Gaps = 4/146 (3%) Strand=Plus/Plus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669 ||| || ||| ||||||| | ||||||||||||| || || || ||| |||||||| Sbjct 7488105 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCT--GTTGGACTTGACATCACTCCCATC 7488162 Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 | ||||| ||| | ||||| || |||||||| ||||| ||||| || | ||| ||| Sbjct 7488163 CTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTC 7488222 Query 18730 TCCATAAAATCAAATGGATTTTTTAC 18755 |||||||| |||||||| || | ||| Sbjct 7488223 TCCATAAAGTCAAATGGGTTCTCTAC 7488248 >seq9297 Length=17183 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044 || ||||| || || | |||||| ||||| || | || ||||| || ||||| || ||| Sbjct 1697 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCTTT 1638 Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104 | ||||||||||| |||||| ||||| || ||||| || |||||||| || ||||| || Sbjct 1637 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 1578 Query 19105 ACTAGTCTTTCTCC 19118 || | |||||| || Sbjct 1577 ACCACTCTTTCCCC 1564 >seq3224 Length=21299586 Score = 102 bits (112), Expect = 9e-17 Identities = 124/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| || ||||| ||||||||||| | ||| ||| |||| || | ||| || |||| Sbjct 2303265 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATAT 2303324 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | | |||||| || |||||||| || |||||||| ||||||||||| | | || Sbjct 2303325 TCAAAGATTGGCTTTGATCAATGAAAGCACCTCTCTCAGCTGCCATCTTGAGAACGGTTT 2303384 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGG 47218 | || | || ||||| || |||||||||| ||| || | ||| || || Sbjct 2303385 TCTGAGAGATTTCCCACACAGTTTTATAAAGTTGCTTCAGGTCATCAGG 2303433 Score = 93.3 bits (102), Expect = 5e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 ||||||||||| || | ||||| || |||| || || || || || ||||| || || Sbjct 2306115 TGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATGGAC 2306174 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 |||||||| || | || |||||||| || ||||||||||| | |||| | ||| || Sbjct 2306175 TCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAACTG 2306234 Query 47448 TTTCTTACTCCATA 47461 ||||||| ||||| Sbjct 2306235 TTTCTTATACCATA 2306248 >seq5558 Length=22633747 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 18673 TGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCC 18732 ||||| || | ||||| ||| ||||||||||| |||||||| ||||| || || |||| Sbjct 15364059 TGATACTCCGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGTTTTCC 15364000 Query 18733 ATAAAATCAAATGGATTTT 18751 ||||||||||| ||||||| Sbjct 15363999 ATAAAATCAAAAGGATTTT 15363981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562040412438120