Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20nemestrina_20[refseq_20GCF_5F000956065.1_202015-03-19] 9,733 sequences; 2,948,703,511 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq37 228 1e-54 seq237 174 2e-38 seq9297 111 2e-19 seq337 82.4 9e-11 >seq37 Length=10148950 Score = 228 bits (252), Expect = 1e-54 Identities = 330/460 (72%), Gaps = 8/460 (2%) Strand=Plus/Plus Query 37176 CATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAAT 37235 || ||||||||||| |||||||| ||||||| ||| || | |||||| |||||||| | Sbjct 6163330 CAAGCAAAATCACAGTGTAAACCCTCATCTCCACTAATAAGTTCATTGGAAAAGGTGAGG 6163389 Query 37236 CCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAA 37295 || ||||| | |||| ||| || | ||| ||||| | ||||||| | |||||||||| Sbjct 6163390 CCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAGA-- 6163447 Query 37296 ATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTA--TAATCAG 37353 | ||||| |||| ||||| |||||| |||| | || | || | | || | || Sbjct 6163448 -TGCCTTCCGCTGCAGCAAAGACTACAACACGT-TCCCCATAGGT-AGCTGCTTTGTCCC 6163504 Query 37354 AAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTT 37413 |||||| | | |||||||||||| || ||||| || |||||||| || | Sbjct 6163505 CAATCCAGTGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCAT 6163564 Query 37414 TTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACA 37473 | ||| |||| | |||||| |||| |||| ||||| ||||| || |||||||||| Sbjct 6163565 TGAAGCGAAATTCCCTTTCTTTGGGATCTTTTATGTAAGTGTCAATAAGGAAACTATACA 6163624 Query 37474 TTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATA 37533 || |||| || || ||||| || || || || || ||| | ||||| | ||||| | | Sbjct 6163625 TTCCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCA 6163684 Query 37534 ATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTG 37593 ||||| || | | | | || | |||||| |||| ||||| |||||||| || | Sbjct 6163685 CCTGAACTTCTTGGCTACATCGCTCCACCAAGTTTGCATTTACTATGCCATCACTTGC-G 6163743 Query 37594 CAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATC 37633 |||||||| | ||||||| |||||||| ||| || || Sbjct 6163744 CAAAGAAAACCAGAACATGGGATATAAAATATCTCTCCTC 6163783 >seq237 Length=7777549 Score = 174 bits (192), Expect = 2e-38 Identities = 321/462 (69%), Gaps = 9/462 (2%) Strand=Plus/Plus Query 37176 CATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAAT 37235 || ||||| | ||| |||||||| ||||| || || || | |||||| ||||| || | Sbjct 5488340 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 5488399 Query 37236 CCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAA 37295 || ||||| | ||| ||| || | ||| ||||| ||||||||| ||||||||||| Sbjct 5488400 CCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGAAG 5488459 Query 37296 ATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAA--CTATAATCAG 37353 | | ||| ||| ||||| ||| ||| |||| || | | | | || | || Sbjct 5488460 GTGCTTTCCACTAGGGCAAAGGCTGCAACACGTTCTCC-ATGGGTAACGTCTTTGTTCCC 5488518 Query 37354 AAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTT 37413 || |||| |||| ||||||| || ||||| || ||||| |||| || | Sbjct 5488519 AA-TCCAACACAAGACCCAAACTGCCTTCTTCTTGACACAGGCA-TTGTTCCAATGGCAT 5488576 Query 37414 TTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACA 37473 | |||||||| | |||||| ||||| | || | || ||||| || | ||||| | Sbjct 5488577 TGAAGAGAAATTCCCTTTCTTTGTTATCTTTAATGT--GTGTCAATAAGGAGACTATTTA 5488634 Query 37474 TTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATA 37533 | ||||| || || ||||| |||| || || || ||||| || || | ||| | || Sbjct 5488635 TGTCAGAATGTATGTTTTCTGTAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCTG-TA 5488693 Query 37534 AT-TGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCT 37592 || |||| || | || ||| | | |||||||||| ||||||||||||| ||| Sbjct 5488694 ATCTGAATTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTACTATCCCATCACATGCT 5488753 Query 37593 GCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCA 37634 ||||||||||| |||| ||| |||||||| |||||| ||| Sbjct 5488754 GCAAAGAAAGCCAGAATATAGGATATAAAATATCTTTCCTCA 5488795 >seq9297 Length=17183 Score = 111 bits (122), Expect = 2e-19 Identities = 99/124 (80%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 37198 CTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttt 37257 |||||||||| || || | |||||| ||||| || | ||||||||| | |||||| || | Sbjct 1699 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCT 1640 Query 37258 tAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATG 37317 | | ||| ||||| || ||||||||||| || |||||||| ||||| || || ||||| | Sbjct 1639 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 1580 Query 37318 CTAC 37321 | || Sbjct 1579 CCAC 1576 >seq337 Length=12475526 Score = 82.4 bits (90), Expect = 9e-11 Identities = 76/94 (81%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930 ||| |||||||| | ||||| || || |||| |||| || || || || |||||||||| Sbjct 7488150 CATCACTCCCATCCTCTGATACTCGCCTACTC-TCTTCTCAAAGAAGTTAGTCTTTCCTT 7488208 Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATT 36964 | ||||| ||||| |||||||| |||||||| || Sbjct 7488209 CCAGTGAAATATTCTCCATAAAGTCAAATGGGTT 7488242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592244737257320