Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20nemestrina_20[refseq_20GCF_5F000956065.1_202015-03-19] 9,733 sequences; 2,948,703,511 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq59 125 6e-24 seq170 118 9e-22 seq148 118 9e-22 seq6335 113 4e-20 seq2224 109 4e-19 seq1314 107 2e-18 seq447 95.1 1e-14 seq2725 87.8 1e-12 >seq59 Length=9163144 Score = 125 bits (138), Expect = 6e-24 Identities = 126/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || || |||| ||| || |||||||||||||| || | ||||||||||||||| || || Sbjct 409651 AGGCCCGTGATGTGCGCAATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGC 409710 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 || || || |||||||| ||||| |||||||| ||||| || || ||||| | || | Sbjct 409711 ACACCTAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTTCACC 409770 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032 || || ||||| || | | ||||| ||||| || ||||| || Sbjct 409771 ACATAGAACTGGCAGAGAGCATGGCATGGAGGCAGTGCCATCAG 409814 Score = 114 bits (126), Expect = 1e-20 Identities = 126/168 (75%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 ||| || |||| ||||| || ||||||||||||||||| || || || || |||| ||| Sbjct 414111 CATATCTCTGTATTCTGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGACCCAAGTC 414170 Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30269 || ||||| ||| ||| ||| ||||||||||||||| ||| || ||||| || Sbjct 414171 CCCTTCTTCTCTGGCGGAGAACCCCAGGCTGTCCAAAAAGTCTCGGGATCCATTGGCATC 414230 Query 30270 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGAccc 30317 |||||| || || ||||| || |||||||| | ||||| || || Sbjct 414231 CCAGATTTTCACTCCCTTGGAAGACAGCTCTTTAGCATTTGTAGATCC 414278 >seq170 Length=10713981 Score = 118 bits (130), Expect = 9e-22 Identities = 185/260 (71%), Gaps = 10/260 (4%) Strand=Plus/Minus Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 112139 ||||||||| || || || || || || |||||||| |||| || || || | | Sbjct 4275209 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTCTGCTGAGAACTAAATTAATTCTACCCTT 4275150 Query 112140 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 112199 | ||||| |||||| || || ||||||||||||||||| ||||| | ||||||| || Sbjct 4275149 TAAAGGTCGATTCTTCTCAGGAATGGAGAACCAAGTCTTCTTACCCGTAATCACCAGATT 4275090 Query 112200 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTGC 112258 ||| || ||| |||||||| || | |||| | ||| | || | | | || || || | Sbjct 4275089 CTGTTTACCTTCTACTGAAGAGGTTGTGGTC-ATTCTCTGGAAATATCTGAATTCATTCC 4275031 Query 112259 AAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACAC 112317 || || |||| ||||| || ||||| || |||||||||||| ||||| || Sbjct 4275030 TGAG------CGGCGGCCAGGGCAGGTCCCCGTTCTTGCCGATGCCCATGTTCTGG-GAC 4274978 Query 112318 ACGGCCACGATACCGTTCAG 112337 || || ||||| | ||| || Sbjct 4274977 ACAGCGACGATGCAGTTTAG 4274958 >seq148 Length=5148307 Score = 118 bits (130), Expect = 9e-22 Identities = 190/267 (71%), Gaps = 12/267 (4%) Strand=Plus/Plus Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 112139 ||||||||| || || || || || || |||||||| |||| || || || | | Sbjct 941425 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTCTGCTGAGTACTAAATTAATTCTACCCTT 941484 Query 112140 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 112199 | ||||| |||||| || || ||||||||||||||||| ||||||| ||||||| || Sbjct 941485 TAAAGGTCGATTCTTCTCAGGAATGGAGAACCAAGTCTTCTTACCCATAATCACCAGATT 941544 Query 112200 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTGC 112258 ||| || ||| |||||||| || | |||| | ||| | || | | | || || || | Sbjct 941545 CTGTTTACCTTCTACTGAAGAGGTTGTGGTC-ATTCTCTGGAAATATCTGAATTCATTCC 941603 Query 112259 AAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACAC 112317 || || |||| ||||| || || || || |||||||||||| ||||| || Sbjct 941604 TGAG------CGGCGGCCAGGGCAGGTCCCCATTCTTGCCGATGCCCATGTTCTGG-GAC 941656 Query 112318 ACGGCCACGATACCGTTCAG--AATGA 112342 || || ||||| | ||| || ||||| Sbjct 941657 ACAGCGACGATGCAGTTTAGCAAATGA 941683 >seq6335 Length=19669406 Score = 113 bits (124), Expect = 4e-20 Identities = 183/259 (71%), Gaps = 7/259 (3%) Strand=Plus/Plus Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 112139 ||||||||| || || || || || || |||||||| |||| || || || || | Sbjct 3005397 ATGAGCTCCTTGAGGAGGTTCCTTGAGTTCTCTGCTGAGAACTAAATTAATTCTATCCTT 3005456 Query 112140 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 112199 | ||||| |||||| || || ||||||||||| ||||| |||||||||||||||| || Sbjct 3005457 TAAAGGTCGATTCTTCTCAGGAATGGAGAACCAGGTCTTCCTACCCATTATCACCAGATT 3005516 Query 112200 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTGC 112258 ||| || ||| |||||||| | | |||| ||| | || | | || || || | Sbjct 3005517 CTGTTTACCTTCTACTGAAGAAGGTGTGGTC-GTTCTCTGGAAATACCTGAATTCATTCC 3005575 Query 112259 AAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATGTCTGGACACA 112318 | || | | |||| ||||| || || || || ||||||||||||| | | ||| Sbjct 3005576 TGATTC---AACG--GCCAGGGCAGTTCCCCATTCTTGCCGATGCCCATGTTTTGGGACA 3005630 Query 112319 CGGCCACGATACCGTTCAG 112337 | || ||||| | ||| || Sbjct 3005631 CAGCGACGATGCAGTTTAG 3005649 >seq2224 Length=56261439 Score = 109 bits (120), Expect = 4e-19 Identities = 184/260 (71%), Gaps = 10/260 (4%) Strand=Plus/Minus Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 112139 ||||||||| || || || || || | |||||||| |||| || || || | | Sbjct 35981147 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTTTCTGCTGAGAACTAAATTAATTCTACCCTT 35981088 Query 112140 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 112199 | ||||| |||||| || || ||||||||||||||||| ||||||| ||||||| || Sbjct 35981087 TAAAGGTCAATTCTTCTCAGGAATGGAGAACCAAGTCTTCTTACCCATAATCACCAGATT 35981028 Query 112200 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTGC 112258 ||| || ||| |||||||| | | |||| | ||| | || | | | || || || | Sbjct 35981027 CTGTTTACCTTCTACTGAAGAGTTTGTGGTC-ATTCTCTGGAAATATCTGAATTCATTCC 35980969 Query 112259 AAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACAC 112317 | ||| | |||| ||||| || ||||| || ||||||| |||| ||||| || Sbjct 35980968 TGA-----GCA-GCGGCCAGGGCAGGTCCCCGTTCTTGCCGATGCTCATGTTCTGG-GAC 35980916 Query 112318 ACGGCCACGATACCGTTCAG 112337 || || ||||| | ||| || Sbjct 35980915 ACAGCGACGATGCAGTTTAG 35980896 >seq1314 Length=2431759 Score = 107 bits (118), Expect = 2e-18 Identities = 166/232 (72%), Gaps = 10/232 (4%) Strand=Plus/Plus Query 112108 TCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGAG 112167 || |||||||| |||| || || || | | | ||||| |||||| || || |||||| Sbjct 1558852 TCTCTGCTGAGAACTAAATTAATTCTACCCTTTAAAGGTCGATTCTTCTCAGGAATGGAG 1558911 Query 112168 AACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCTCTGACTGAAGACGTAGCG 112227 ||||||||||| ||||||| ||||||| ||||| || ||| |||||||| || | | Sbjct 1558912 AACCAAGTCTTCTTACCCATAATCACCAGATTCTGTTTACCTTCTACTGAAGAGGTTGTG 1558971 Query 112228 GTCAAGGCTC-GAAAGTGTTTAAAATCTTTGCAAAGTCTCGCAGGATGCCACGGCAGATC 112286 ||| | ||| | || | | | || || || | || || |||| ||||| || Sbjct 1558972 GTC-ATTCTCTGGAAATATCTGAATTCATTCCTGAG------CGGCGGCCAGGGCAGGTC 1559024 Query 112287 TCCGTTGTTCCCGATGCCCATG-TCTGGACACACGGCCACGATACCGTTCAG 112337 ||||| || | |||||||||| ||||| |||| || ||||| | ||| || Sbjct 1559025 CCCGTTCTTGCGGATGCCCATGTTCTGG-GACACAGCGACGATGCAGTTTAG 1559075 >seq447 Length=39453387 Score = 95.1 bits (104), Expect = 1e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 112139 ||||||||| || || || || || || |||||||| ||| || || || | | Sbjct 33138759 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTCTGCTGAGATCTAAATTAATTCTACCCTT 33138700 Query 112140 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 112199 | |||| |||||| || || ||||||||||||||||| ||||||| ||||||| || Sbjct 33138699 TAAAGGTTGATTCTTCTCAGGAATGGAGAACCAAGTCTTCTTACCCATAATCACCAGATT 33138640 Query 112200 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCA 112231 ||| || ||| |||||||| || | ||||| Sbjct 33138639 CTGTTTACCTTCTACTGAAGAGGTTGTGGTCA 33138608 >seq2725 Length=139622 Score = 87.8 bits (96), Expect = 1e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 112093 GGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTC 112152 || || || || || || |||||||| |||| || || || || | | ||||| || | Sbjct 78676 GGAGGTTCCTTGAGTTCTCTGCTGAGAACTAAATTAATTCTATCCTTTAAAGGTCGATGC 78735 Query 112153 TTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCTCTG 112212 || || || ||||||||||| ||||| |||| ||| ||||||| ||||| || ||| Sbjct 78736 TTCTCAGGAATGGAGAACCAGGTCTTCCTACGCATAATCACCAGATTCTGTTTACCTTCT 78795 Query 112213 ACTGAAGA 112220 |||||||| Sbjct 78796 ACTGAAGA 78803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408569129397209