Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20nemestrina_20[refseq_20GCF_5F000956065.1_202015-03-19] 9,733 sequences; 2,948,703,511 total letters Query= NC_017979.1 Length=43376 Score E Sequences producing significant alignments: (Bits) Value seq9224 93.3 1e-14 seq170 89.7 1e-13 >seq9224 Length=17174830 Score = 93.3 bits (102), Expect = 1e-14 Identities = 179/263 (68%), Gaps = 6/263 (2%) Strand=Plus/Minus Query 965 TGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGATTGATGT 1024 ||| |||||||| ||| ||||||| |||| || || || || || | |||||||| Sbjct 3229548 TGGGTGTTATGGAAGAGTAGCTCCACGGTCAGGCTTGGCTGCAAAACACTTTATTGATGT 3229489 Query 1025 GGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTATTTAATTT 1084 || |||||||| || || ||| | ||| || || ||||||||||| | |||||||| Sbjct 3229488 AGGAGCTGGTGTCATAAATGAAGATTATAGAGGAAATGTTGGTGTTGTACTGTTTAATTT 3229429 Query 1085 TAGC---GATAAGCGTTTTCATATTTCAAGAGGTGATAGGATTGCTCAGTTAATTTGTGA 1141 | || || ||| ||| | | || |||||| | ||||| || | ||||| || Sbjct 3229428 TGGCAAAGAAAAG---TTTGAAGTCAAAAAGGGTGATCGAATTGCACAACTCATTTGCGA 3229372 Query 1142 AAAGGCTGTTTTTCCATCCATTCAAATAGTGGATTCCTTAGAGGATTCGGAAAGGGGTTC 1201 | | | ||| |||| || || ||| | | || || || | ||||||||||| Sbjct 3229371 ACGGATTTTTTATCCAGAAATAGAAGAAGTTCAAGCTTTGGATGACACCGAAAGGGGTTC 3229312 Query 1202 TGCAGGATTTGGGTCTACCGGAA 1224 | || ||||| || || |||| Sbjct 3229311 AGGCGGTTTTGGTTCCACTGGAA 3229289 >seq170 Length=10713981 Score = 89.7 bits (98), Expect = 1e-13 Identities = 182/265 (69%), Gaps = 9/265 (3%) Strand=Plus/Plus Query 965 TGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCG-GCTAAGTTTATGATTGATG 1023 ||| |||||||| ||| ||||||| ||| || || || || || | ||||||| Sbjct 2521620 TGGGTGTTATGGAAGAGTAGCTCCACAGTCAGGCTTGGCTTGCAAAACACTTTATTGATG 2521679 Query 1024 TGGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTATTTAATT 1083 | || |||||||| || ||| ||| | ||| || || ||||||| ||| | ||||| | Sbjct 2521680 TAGGAGCTGGTGTCATAGATGAAGATTATAGAGGAAATGTTGGTGGTGTACTGTTTAACT 2521739 Query 1084 TTAGC---GATAAGCGTTTTCATATTTCAAGAG-GTGATAGGATTGCTCAGTTAATTTGT 1139 || || || ||| ||| | | | || || ||||| | ||||| ||| | ||||| Sbjct 2521740 TTGGCAAAGAAAAG---TTTGA-AGTCAAAAAGTGTGATCGAATTGCACAGCTCATTTGC 2521795 Query 1140 GAAAAGGCTGTTTTTCCATCCATTCAAATAGTGGATTCCTTAGAGGATTCGGAAAGGGGT 1199 ||| | | ||| |||| || || ||| | | || || || ||||||||||| Sbjct 2521796 GAACGGATTTTTTATCCAGAAATAGAAGAAGTTCAAGCTTTGGATGACACGGAAAGGGGT 2521855 Query 1200 TCTGCAGGATTTGGGTCTACCGGAA 1224 || | ||| ||||| || || |||| Sbjct 2521856 TCAGGAGGTTTTGGTTCCACTGGAA 2521880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138665571267348