Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20nemestrina_20[refseq_20GCF_5F000956065.1_202015-03-19] 9,733 sequences; 2,948,703,511 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq1 196 9e-45 seq3224 96.9 6e-15 seq1113 89.7 1e-12 >seq1 Length=22034461 Score = 196 bits (216), Expect = 9e-45 Identities = 189/243 (78%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 241385 AGCTGCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGG 241444 ||| |||||||||| | || | ||| || ||||| ||||||||| ||||||||||| Sbjct 7915123 AGCAGCTGACAGCCGTTGCTGACGTGGGTCATGACCTTCTGTTTGAGCTGGGCCACCTGC 7915182 Query 241445 TCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACT 241504 ||||| || | | |||||| | ||||| || ||||| || | ||||||| |||||| Sbjct 7915183 TCCCGGAGGAGGCCGGCGGTACTCGACAGCCCCGCGTTCTCGGCCTTGAGCGTCTTCACC 7915242 Query 241505 TTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAG 241564 || |||||||| ||||||||||| ||||| || ||| ||||| |||||||| |||| Sbjct 7915243 TTGTCCTCCAGGCGCGCGATGCGCTCCAGCTTCCGCTTCCGGCACTTGGTGGCCGCCAGC 7915302 Query 241565 CGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGA 241624 |||||||| || | ||| || ||| | |||||||| || ||||| ||||||| ||| || Sbjct 7915303 CGGTTCCGCAGCCGCTTGCGCTCCACTTTGATGCGCTCTTGGTCTTCCATGTTGATGGGG 7915362 Query 241625 GAC 241627 ||| Sbjct 7915363 GAC 7915365 Score = 141 bits (156), Expect = 2e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 ||||| | ||| ||||| || |||||||| || ||||| | | ||| || | ||| Sbjct 1835938 AGGACTTTCTGCTTGAGCTGCGCCACCTGCTCGCGCAGCAGGCTCGCTGTGGACGCCAGC 1835879 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 | | ||| | ||| || |||||||||||||||||| |||| |||||| ||||| Sbjct 1835878 TCCGTGTTCTGGCTCTTAAGGGTCTTCACTTTCTCCTCCAGGCGCGAGATGCGCTCCAGC 1835819 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 |||||| |||||| |||| ||| || | |||||| || || | ||| || ||||||||| Sbjct 1835818 TTGCGCTTGCGGCACTTGGAGGCGGCGATGCGGTTGCGCAGCCGCTTGCGCTCCGCCTTG 1835759 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 ||||| ||||| ||||||||||| || ||| Sbjct 1835758 ATGCGCTCCTGCGTGTCCATGTCGATGGGCGAC 1835726 Score = 89.7 bits (98), Expect = 1e-12 Identities = 88/115 (77%), Gaps = 8/115 (7%) Strand=Plus/Plus Query 238926 TCTGTTTGAGTTGGGCCACCCGGTCCCGCAGAACGGACGCGGTATTGGACAGACCCGCGT 238985 |||||||||| ||||||||| | ||||| || | | |||||| | ||||| ||||||| Sbjct 7915160 TCTGTTTGAGCTGGGCCACCTGCTCCCGGAGGAGGCCGGCGGTACTCGACAGCCCCGCGT 7915219 Query 238986 TATCAGACTTGAGCAT--------TCTCCTCCAGCCGCGCGATGCGTTCCAGCTT 239032 | || | ||||||| | | |||||||| ||||||||||| |||||||| Sbjct 7915220 TCTCGGCCTTGAGCGTCTTCACCTTGTCCTCCAGGCGCGCGATGCGCTCCAGCTT 7915274 >seq3224 Length=21299586 Score = 96.9 bits (106), Expect = 6e-15 Identities = 92/115 (80%), Gaps = 2/115 (2%) Strand=Plus/Plus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 |||||||||| || || |||||||||||||||||| |||||| ||||||||||| ||| Sbjct 2316034 GTGTACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAGGTTCTGCTGG 2316093 Query 213588 TTTGACTTTGCGTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCT 213641 || |||| || | || ||||| ||||||||||| || |||| || || ||| Sbjct 2316094 TTGCTCTTT-CGATTACAGGAATCTTTGTAGAGCATATATGGGGTGCCTGTTTCT 2316147 >seq1113 Length=44674081 Score = 89.7 bits (98), Expect = 1e-12 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558 |||||||| ||||||||||| ||||| | ||||| || | ||||| |||| ||| Sbjct 39169618 TTCACTTTTTCCTCCAGCCGGGCGATTCTCTCCAGCTTCCTTTTTCGGCACTTGGAGGCA 39169677 Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618 || | |||||||| | | ||| | ||||||||||| || |||||| ||||||||| Sbjct 39169678 GCAATGCGGTTCCTCATACGCTTCCTCTCCGCCTTGATCCGCTCCTGGGACTCCATGTCA 39169737 Query 241619 ATCGGAGAC 241627 || || ||| Sbjct 39169738 ATGGGGGAC 39169746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931419467390720