Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20nemestrina_20[refseq_20GCF_5F000956065.1_202015-03-19] 9,733 sequences; 2,948,703,511 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq37 105 1e-17 seq337 93.3 8e-14 >seq37 Length=10148950 Score = 105 bits (116), Expect = 1e-17 Identities = 392/601 (65%), Gaps = 29/601 (5%) Strand=Plus/Minus Query 25474 GATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGAT 25533 ||||| ||| ||||||| |||||||| || || |||||||||||| ||| | || Sbjct 6163882 GATATCTGGCAGATGTATAAGAAGGCGGAAGCTTCCTTCTGGACCGCCGAGGAGGTGGAC 6163823 Query 25534 CTGGCCAAGGACATGGACGGCTGGTACGCTCT--ATCCAAAGACGAGCAGCATTTTCTCA 25591 | | |||||||||| |||| | || | || || ||| ||||| | Sbjct 6163822 CCGTCCAAGGACATTTGGCACTGGGAATTCCTGAAGCCCGAGGAGAGAT--ATTTTATAT 6163765 Query 25592 AGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGA 25651 | || ||| |||||||| || |||||| ||||| || | || || ||| Sbjct 6163764 CCCATGTTCTGGTTTTCTTTGC-GCAAGTGATGGCATAGTAAATGCAAACTTGGTGGAGC 6163706 Query 25652 GATTCACCAGGGAAGTGCAGTACGTG---GAGGCCAAGTGTTTCTACGGTTTCCAGATGG 25708 ||| | | ||||| ||| ||| || ||| ||||||| || ||||| || | Sbjct 6163705 GATGTAGCCAAGAAGTTCAG---GTGACAGAAGCCCGCTGTTTCTGTGGCTTCCAAATTG 6163649 Query 25709 CCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTC--TGATGACG--TACATTACA 25764 |||| ||||| | || |||| ||||| || ||| | |||| ||||| | | Sbjct 6163648 CCATGGAAAACATACATTCTGGAATGTAT----AGTTTCCTTATTGACACTTACATAAAA 6163593 Query 25765 GACGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGG 25824 || | || || || | || |||||| || || || | |||||| | Sbjct 6163592 GATCCCAAAGAAAGGGAATTTCGCTTCAATGCCATTGAAACGATGCCTTGTGTCAAGAAG 6163533 Query 25825 AAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGC-GCTACGTTTGGCGAGCGGCT 25883 ||||| |||||| || | ||||| | || ||| ||||| | ||| || || | Sbjct 6163532 AAGGCAGATTGGGCCTTGCACTGGATTGGG-GACAAAGCAGCTACCTATGGGGAACGTGT 6163474 Query 25884 GGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTG 25943 |||| ||||||||| | ||| |||||||||| |||| ||||| | || ||||| Sbjct 6163473 TGTAGTCTTTGCTGCAGCGGAAGGCATCTTTTCT---GGTTATTTTGCATCGATATTCTG 6163417 Query 25944 GCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGG 26002 ||||||| | | | |||| ||||| || || ||||||||| || || || || | | Sbjct 6163416 GCTCAAG-AAACGAGGACTGATGCCTGGCCTCACCTTTTCCAATGAACTTATTAGTGGAG 6163358 Query 26003 ACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAAC 26062 | |||||| | ||| | |||||||| |||||| | | || ||| || | ||||||| Sbjct 6163357 ATGAGGGTTTACACTGTGATTTTGCTTGCCTGATGTTCA---ATCACCTGGTACACAAAC 6163301 Query 26063 C 26063 | Sbjct 6163300 C 6163300 >seq337 Length=12475526 Score = 93.3 bits (102), Expect = 8e-14 Identities = 97/125 (78%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 25885 GTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGG 25944 |||||||||||||| ||||| |||||||| || |||||| ||||| | || |||||| Sbjct 7490380 GTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCCGGTTCTTTTGCATCGATATTCTGG 7490321 Query 25945 CTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGA 26003 |||||| | | | |||| ||||| || || |||||||| || || |||||||| || Sbjct 7490320 CTCAAG-AAACGAGGACTGATGCCTGGCCTCACATTTTCCAATGAACTTATCAGCAGAGA 7490262 Query 26004 CGAGG 26008 |||| Sbjct 7490261 TGAGG 7490257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928731794419520