Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20nemestrina_20[refseq_20GCF_5F000956065.1_202015-03-19] 9,733 sequences; 2,948,703,511 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq1558 293 3e-74 seq3558 185 1e-41 seq4447 109 6e-19 seq2 102 9e-17 seq7335 87.8 2e-12 >seq1558 Length=28977278 Score = 293 bits (324), Expect = 3e-74 Identities = 660/986 (67%), Gaps = 13/986 (1%) Strand=Plus/Minus Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111 || ||| || |||| ||| |||| ||| || | |||||| || |||| || ||||| || Sbjct 7036431 CAAATGCTCATCCAAACACTGGATGGCAAAGAGGTCAACATCCACGTCAAACTTATTGGC 7036372 Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171 |||| ||||| || | || ||||||| || ||| || | || || | ||| || Sbjct 7036371 AAACAAGTGGTGT---TTGCGCAGCATCCAGTTCAAGTCACCAGCTCCAAAAATGCACAC 7036315 Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231 || || | ||| || || | ||| || ||||| | || || || | || ||||| || Sbjct 7036314 CGAGCGCACGTGGACTCCATCGCAGGGAGGGTAGGGGGCACCCTTGGAAACATCACCCTC 7036255 Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291 |||| |||||||| ||||||||||| | || |||||||| || ||||| || | Sbjct 7036254 AAAGTATTGCCACTTGACAAACCTGGCAACTGCTTGCATGTCAGACAAATCGTACTTATG 7036195 Query 160292 CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTC 160351 | | || | || || || | || || | ||| | ||||||||| || | || Sbjct 7036194 GCTGGCAGAAAGTGAGCCCGGGACTTCAGGAATCCTCTGGATGGTGGCCCAGAGATACTC 7036135 Query 160352 GTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTCCCGCAG 160411 || |||||||| ||||| | | ||| ||||| |||| ||| | | | || Sbjct 7036134 ATCAGGGCTGTATGTGTCTTGCGCCCACTCCATAAACTTCTGGATGTTTTCATTCTGTAG 7036075 Query 160412 AACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTAT 160471 || | || || || | || |||||||| || ||||| || || | ||| | Sbjct 7036074 TACATACCCCACATACTCCCTACTGACCACAAAGTAGGCACTGCCAGAAAAAAGAGGTGT 7036015 Query 160472 ---GGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCACCAG 160528 | | ||| || | |||| | || ||||| | || | ||| || || | Sbjct 7036014 TTCGAGCGGAGGAAGCAT---TTTGACAGTCCCTGTGTTTGTCAGCTTTCCATTAACGAC 7035958 Query 160529 CGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGACT 160588 | | | ||||| |||||||| | || || | |||||| | ||||| || || || Sbjct 7035957 CTCATACCGCTTTTTCCACCTTTCTTCTTTATGGGATGGCATCCTCTCCGTTTCCAGGCT 7035898 Query 160589 GTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAA 160648 ||| | || | | | || |||| | |||| || |||||||| || || | ||||| Sbjct 7035897 GTTTTCTCCCATTAACAACTTGAGCTTCCTGACAATTTCTAGGTTGGTTTTTATAGGAAA 7035838 Query 160649 GTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCCCT 160708 || |||| || | ||||||| ||||||||| || || |||| | | |||||| | Sbjct 7035837 ATCCATACCACAAAGATTTATCAAGTACTTCCAGTTTGCACTCATTGCATAGAGGTCCTT 7035778 Query 160709 CATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTT 160768 |||||| || | || ||||| || || ||||| || || || || || |||| | | Sbjct 7035777 CATGCAGTTGAGGTCAGCCTGAACCCGACTCCATGATGCATAAACCACACTCTCCAATCG 7035718 Query 160769 ACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAG--AAAGAAC 160826 |||||||||||||| ||| |||||| || |||| |||| ||| | ||| ||| | Sbjct 7035717 GCTGGCCACAAAGACATTACTGAAACAGGAAGCGATGCCCATCACTG-CAGCTAAATAGG 7035659 Query 160827 ATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCC 160886 | | || | ||| |||||| || | |||||| | ||||||||| ||||||||| Sbjct 7035658 A-ATCCTCGGATTTTGTGTCCACATGAATGCAATAGAAATTCTGAGGCATATAGATGGCC 7035600 Query 160887 CTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGA 160946 || |||| ||| || | ||| || ||||| ||||| | ||| ||||| || ||||| ||| Sbjct 7035599 CTCAGCAGCCTGTCAAGCATTTCAATCTTGTGATGAACCACTATAGAATATGCTATTGGA 7035540 Query 160947 AACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAATAA 161006 ||||| | ||| || ||| |||| | | || || || ||||||| ||| || Sbjct 7035539 AACTCTGCCTCTTCTTTACTAAGGGGTTCTACAATATATTTGCGTCTCTTGATGAAAGAA 7035480 Query 161007 TCACAATCCCGCGTCATGTTGATATA 161032 ||| || | |||||||| ||||| Sbjct 7035479 GTACAGTCACTGGTCATGTTTATATA 7035454 >seq3558 Length=16468325 Score = 185 bits (204), Expect = 1e-41 Identities = 236/324 (73%), Gaps = 2/324 (1%) Strand=Plus/Plus Query 168151 ATAGA--GTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCA 168208 ||||| || | ||| | | |||| || ||||| || || || || || |||||||| || Sbjct 14725622 ATAGACCGTGAGGCAGGCTGTTCCTGAGATCTTCCCAGAACCAAAGGTATTGAAGAGACA 14725681 Query 168209 CATGAAGCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAG 168268 |||| | || ||||| ||||||| |||| ||||||| || || | |||| |||| |||| Sbjct 14725682 CATGTAACACCCTTCATCCTCCAGGGTGATATTCCAGAAGGTGATGGTTGTGTTTTGGAG 14725741 Query 168269 GCCCAACTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTT 168328 |||| ||| || ||||| | || ||||| | ||| || | || || || ||||| Sbjct 14725742 TCCCAGCTGGGTAATGTTTATCTTGTCCTTATAGGCAGGCTGGATCACCACCCCATGGTT 14725801 Query 168329 CTCGCTGAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTAT 168388 ||||||||||||| ||||||| || ||||| || || | |||||||| || || || Sbjct 14725802 CTCGCTGAAGGTGACCATGTTTTCTGGGCTTACAGCTTTCTTTTTCTGCCATGTCACAAT 14725861 Query 168389 CAGAACCTCTTTATCGGTCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTC 168448 ||| || || | | | ||||| || ||||| | ||||| ||||||| |||| | || Sbjct 14725862 CAGGACTTCCTGGGCATTTTGCAGAGAGCATCTTAAGGAAGCAGGAGTGTACAGCTGCTC 14725921 Query 168449 TCGCTCATCTTGAGTTACGACCTG 168472 || ||||| || || || || || Sbjct 14725922 TCTTTCATCCTGGGTCACCACTTG 14725945 Score = 89.7 bits (98), Expect = 6e-13 Identities = 152/220 (69%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 167883 GTTTGCCGTATGTCCGTTACAGTTCCCAAATGTAGTACCTTGCATATCACCTCTCCGTTT 167942 |||||| | ||| || ||||| |||| || || |||| ||| |||||||| || Sbjct 14723080 GTTTGCTTAAAGTCAGTCACAGTCCCCAGGTGCAGCACCTGGCAGATCACCTCC---TTC 14723136 Query 167943 CCTACTTGACTCTTTGGATCTTTTACTTGTAAAATGCTAGTTACACTTGTAGTTCCATTG 168002 || || ||| |||| || ||||| || || | ||||| || ||| ||||| ||||| Sbjct 14723137 CCCACCTGATTCTTAGGGTCTTTGACATGGAGGATGCTGGTAACAGACGTAGTCCCATTT 14723196 Query 168003 CGATGTAAAACGGTTTTCGTGCTGTTCTCAATCCCTGATCCTGCCACCTTCCAGAATATT 168062 | || | | || || || || |||| |||||| | | ||||||||||| || Sbjct 14723197 GGGTGAGACAGAGTCACTGTACTATTTTCAAACCCTGACCGAGGGACCTTCCAGAAGATC 14723256 Query 168063 ACAGGAGCGGGTCGTGCTGTAGCAGAGCAGGTAATATTTA 168102 | || || || || || || |||||||| || || |||| Sbjct 14723257 ATGGGGGCTGGGCGGGCAGTGGCAGAGCAAGTGATGTTTA 14723296 >seq4447 Length=19884865 Score = 109 bits (120), Expect = 6e-19 Identities = 219/323 (68%), Gaps = 5/323 (2%) Strand=Plus/Plus Query 160047 TGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTA 160106 |||| |||| | || |||| |||||||| ||| || | ||||| ||| ||| | ||| Sbjct 2611866 TGTCTCAGAAGATCATCCAAACATTGGATGGCAAAGAGGTCAATGTCAATGTCAAGCTTA 2611925 Query 160107 TTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACG 160166 || || || | ||||| || | || ||||||| || ||| || | || || | | Sbjct 2611926 TTGGCAAATAAGTGGTGC---TTGCGCAGCATCCAGTTCAAGTCACCAGCTCCAAAAATG 2611982 Query 160167 CAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCA 160226 || || || | |||| | || | ||| | |||| |||| ||||| | || ||| Sbjct 2611983 CACACCGAGTGATTGTGGTCCCCATCGCA--GTAGGTAGGGAGCACCTTTGGAAACATCA 2612040 Query 160227 CCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTAT 160286 || || || |||||||||| ||||||||||| | || |||||||| || ||| || Sbjct 2612041 CCCTCCAAGCACTGCCACTTGACAAACCTGGCAACTGCATGCATGTCAGACAAGTCATAC 2612100 Query 160287 TTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGG 160346 || | | || | | |||||| || | || |||| ||| | ||| |||| || Sbjct 2612101 TTATGGTTTGTGGAGAGTGAACCGGGGACTTCAGGAATACTCTGGATGGTATCCCAGAGA 2612160 Query 160347 TGTTCGTCGGGGCTGTACGTGTC 160369 || || || ||||||| ||||| Sbjct 2612161 TGCTCATCAGGGCTGTGTGTGTC 2612183 Score = 93.3 bits (102), Expect = 5e-14 Identities = 225/338 (67%), Gaps = 6/338 (2%) Strand=Plus/Plus Query 160623 ATCTCTAGGTTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCAT 160682 || |||||||| | || | ||||| || |||| || | |||| || | | ||||| Sbjct 2612435 ATTTCTAGGTTGGATTTAATGGGAAAATCCATACCACAAAGTTTTACCAAGAATTTCCAG 2612494 Query 160683 TTCGCGCTCAGGTCGTGCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAG 160742 || ||| | | ||||| ||||||| || | | ||||| || ||||||| Sbjct 2612495 CCTGCAGTCATTGCTTAGAGGTCATTCATGCAGTTGAGGTTAGCCTGAACCTGGCTCCAT 2612554 Query 160743 GAAGCGTACACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACG 160802 || || || || || |||| | | || ||||||||||| ||| | |||| | | Sbjct 2612555 GATGCATAAACCACCGTCTCCAATCAGCTCGCCACAAAGACTTTACTGGAACAGAATGCA 2612614 Query 160803 ATTCCCACCACCG---CCAGAAAGAACATCTTATCCGCCTTTCGGTCCACGTGCACGCAA 160859 || |||| ||| | | | |||| | ||| | | | ||| ||||||||| | || | Sbjct 2612615 ATGCCCATCACTGTAGCTAAAAAGGA-ATCCTCT--GATTTTTTGTCCACGTGAATGCGA 2612671 Query 160860 TACAGGTTCTGAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGA 160919 || | ||||||||| ||||||||||| || | ||| | | ||| || |||| ||| Sbjct 2612672 TAGAAATTCTGAGGCATATAGATGGCCCTCAGTAGCCTGTAAAGCATTTCAGTCTTGTGA 2612731 Query 160920 TGGATCACGATAGAGTAGGCTATCGGAAACTCGGTCTC 160957 || | | ||||| || ||| | ||||||| | ||| Sbjct 2612732 TGAACTGCTATAGAATATGCTGTTTGAAACTCCGCCTC 2612769 >seq2 Length=40200012 Score = 102 bits (112), Expect = 9e-17 Identities = 198/290 (68%), Gaps = 7/290 (2%) Strand=Plus/Plus Query 160097 GTCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGA 160156 ||| || || || || ||||| || || ||| || || |||||||||| ||| || | Sbjct 13978865 GTCAAACTTGTTGGCCAACAGGTGATG---GTTTTGAAGCATCCAGTGCAAGTCCCCAGC 13978921 Query 160157 CCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTT 160216 ||| | || ||||| | || ||| | || |||||| | || |||| || || Sbjct 13978922 CCCATAAACACAGACAGCCCGCTGGTGGATTCCAGAGCAAGGGGCATAAGGAGCACCCTT 13978981 Query 160217 CGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGA 160276 | | ||| || || | | ||||||||| || | |||||| || | |||||| || Sbjct 13978982 ATCGATGTCTCCCTCATGATCCTGCCACTTGACCAGCCTGGCAATAGAAGTCATGTCTGA 13979041 Query 160277 GGTGTCGTATTTGTACATCAGGGGAACGGCACCGGGAA--CGCCGGGCATACGCTGTAGG 160334 | ||||||| ||| |||||| | || || | | ||| ||| ||||| ||| Sbjct 13979042 GATGTCGTACTTGGGGTGGTTGGGAACAGAGCCAGGCATCCACCGTGCA--CGCTGAAGG 13979099 Query 160335 GTGGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCAT 160384 |||||||| |||||||| || ||||| || ||||| || |||||| || Sbjct 13979100 GTGGCCCAGAGGTGTTCATCAGGGCTATAGGTGTCTTTTACCCATTCAAT 13979149 >seq7335 Length=18038377 Score = 87.8 bits (96), Expect = 2e-12 Identities = 161/234 (69%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 160045 TGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATT 160104 |||||| |||||| | |||| ||| |||| |||||| | |||||| | | || || | Sbjct 12221691 TGTGTCTCAGATGCTTATCCAAACACTGGATGGCGAAAAGGTCAACATACACATCAAACT 12221750 Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCG-AAC 160163 |||| | ||||| |||| || | || ||||||| || |||||| | | | || Sbjct 12221751 TATTGACAAACAGGCGGTGC---TTGAGCAGCATCCAGTTCAAGTCTCCAGCTCTGGAAA 12221807 Query 160164 ACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACG 160223 ||||| | || | ||||| || || | ||| | || | |||| || | | || Sbjct 12221808 ACGCACATTGAGCACATGTGTACTCCATCGCAGGATGGTCATGGAGCACCCTAGGAAACA 12221867 Query 160224 TCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAG 160277 |||| || |||||| |||||| ||| | || || || || |||||||||||| Sbjct 12221868 TCACACTCAAAGTACTACCACTTGACAGAGCTAGCAATTGCGTGCATGTCGGAG 12221921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577148974069080